PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007386
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 488aa    MW: 54316.1 Da    PI: 6.9705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007386genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-17166212148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed +l+ +v+++G + W++Ia++m  gR +kqc++rwq++l
      DCAR_007386 166 KGQWTIDEDRKLLSLVHEYGDRKWALIAEEML-GRAGKQCRERWQNHL 212
                      799****************************9.*************97 PP
2Myb_DNA-binding52.98.4e-17218260145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+  l++++++lG++ W+ Ia++++ gR+++ +k++w+
      DCAR_007386 218 KDSWSEEEERMLIECHQRLGNR-WAEIAKRIP-GRSENAIKNHWN 260
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.633161216IPR017930Myb domain
SuperFamilySSF466895.03E-29165259IPR009057Homeodomain-like
SMARTSM007171.8E-14165214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-25167219IPR009057Homeodomain-like
PfamPF139219.0E-19169229No hitNo description
CDDcd001671.95E-14169212No hitNo description
PROSITE profilePS5129419.86217267IPR017930Myb domain
SMARTSM007171.1E-16217265IPR001005SANT/Myb domain
CDDcd001671.22E-13220263No hitNo description
Gene3DG3DSA:1.10.10.604.0E-21220265IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAHHGASGYG GGASTGLFGF EISPDHNNLT IPPRNPPAFN NHTSIPPFSA VERFVAGHHE  60
MPTRQNNMLI FNQNYLHGPD ESTDFFFGNS HSGLNHLGAP PPPRGQGSNN IIQQGPHGFY  120
MTESQIRNWE RNVAANREQA MRRTHDLRQR KRRRVRGGGH SSTNIKGQWT IDEDRKLLSL  180
VHEYGDRKWA LIAEEMLGRA GKQCRERWQN HLRPDIKKDS WSEEEERMLI ECHQRLGNRW  240
AEIAKRIPGR SENAIKNHWN ATKRRQFPKK RKAKRDRDAS KNSVLRDYIT AKLLKAAASH  300
GPNATAPAPP APPNSNSGGP ANNSEVPQST SEDSTGFEPL SDEDLDFMKN VLGSVNNPVA  360
GDGNLVSDGN VNSSSSSENG AMMITPDHQN MELNENAVNG DVMMQPMNTD YVQPAADPYK  420
VSDLLDGVYS TPYLDYCFDG TPYVDKAHQQ QQQEQLMNQA AEGAASTSGT KEMDLFDMVL  480
ANFHYPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-431652663104C-Myb DNA-Binding Domain
1msf_C5e-431652663104C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153RKRRR
2150154KRRRV
3262274KRRQFPKKRKAKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A161XHM50.0A0A161XHM5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-55myb domain protein 119