PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007336
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 168aa    MW: 18962.7 Da    PI: 6.6253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007336genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013153123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H++ H
  DCAR_007336 31 YQCVFCKRGFTTAQALGGHMNIH 53
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-42957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.43E-62958No hitNo description
PROSITE profilePS5015710.9283158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESNHHEWMN SGDQEVDQQE LDYSDGVARS YQCVFCKRGF TTAQALGGHM NIHRKDRAKT  60
RPVANSTNFN NKKEESYSGP RFYQPISSYG PCYAAGQRGQ TIHYRTFFPA STSSTHDLRS  120
VPFGEESEYR MSLSNLQYGA SKYADDLEKM RGGNENDGLD LELRLGH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233609.11e-125PREDICTED: protein LATE FLOWERING-like
TrEMBLA0A161XHI31e-124A0A161XHI3_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s04250.12e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.19e-17C2H2 family protein