PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 220aa MW: 24523.5 Da PI: 8.9279 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.6e-15 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r ++ ++E++l+++++++lG++ W++Ia +++ gRt+k++ ++w+++l DCAR_007287 73 RENFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDKEVENYWNSHL 118 67899*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.263 | 10 | 61 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 20.034 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 73 | 118 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-12 | 74 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 75 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.38E-11 | 75 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MRKPSRVRRL TSNKAGAWSE EKLQSKMVVA EEAGQNGKGW SHSSSHQPPG EPGSKKSCRL 60 RSMRNDTRPE LERENFGEDE EDLIIKLHAL LGNRWSLIAG RLPGRTDKEV ENYWNSHLKG 120 ELVSSGIDPD NHRIHHTLPR SKNKNQIPVI SSSDDSSTCA TSAVSKPLKY QDQSYKMHHL 180 SNGTDNLELS FTCDTKAPDL CAELPIINLK PHAGPQEKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-13 | 16 | 119 | 8 | 105 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234074.1 | 1e-162 | PREDICTED: transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 1e-32 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A166EEE5 | 1e-161 | A0A166EEE5_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71030.1 | 2e-35 | MYB-like 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007287 |