PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007224

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 308aa MW: 34139.6 Da PI: 6.4246

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007224	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.1	1.8e-14	126	172	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L DCAR_007224 126 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 172 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	123	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-12	126	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-15	127	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-15	127	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-13	129	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.67E-5	136	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MQQQNMSDAY FQAAAGSNMM FPEVMPWNLP HAGFNPVHFQ TNPMIDHDPF LLPPQPPSQY 60 GGAAMFNRRS YGNYDGSSSD HLRFLSDTVL GQMVHQPCSV PFGLQAELGK LSAQEIMDAK 120 ALAASKSHSE AERRRRERIN NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTSIIA 180 ESSPVPTESD ELSVENEADE DGRFVIKASI CCQDRNDLLP DLIKTLKAMR LRTLKAEITT 240 LGGRVKNVLF ITADDQKSSC DVDEQMQPHE YSISSIQEAL KAVMEKSSGD ESSPGTVKRQ 300 RTNINII*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231676.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	5e-93	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A166ECP2	0.0	A0A166ECP2_DAUCS; Uncharacterized protein
STRING	POPTR_0008s11490.1	1e-139	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-88	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_007224

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]