PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007167
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 359aa    MW: 41194.4 Da    PI: 6.6094
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007167genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.58.5e-191153345
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  en++ rq t+skR+ng+ KKA+EL +LCd++  +++fs++gk
  DCAR_007167 11 LENSTGRQSTYSKRKNGLTKKAKELAILCDIDLVLLMFSPSGK 53
                 69***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.282161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-17323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-191157IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRVKLKIQK LENSTGRQST YSKRKNGLTK KAKELAILCD IDLVLLMFSP SGKPSVYKGQ  60
RSSIEKIIER YSLHTPQERA RRKLESLEAL KKTFKKSNHD VKIQDFLGPN YISVEDLRSQ  120
AESLHIQLSE AQKKLSNWTS VDTMDSIENL GQMELFLRNS LDQLQTQKVN LEKQQQMDMQ  180
YFNKFQDDWH PPSTLGYEQL QPLQWVPNSH RQEITPNNLT SFPPREPECS VGTSIENYKN  240
IINRGEGVVT PKEWQQDNFL AELNSRGSMN LLPNNQFNFQ VHEQLIHPSS NFDLSNDQDF  300
LPVEQINMQA NAMEPLPYSK LEVPQSVYDP FHNNWDSNTA GTCGTETIEK HLLPQASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-12192190MEF2 CHIMERA
6byy_B2e-12192190MEF2 CHIMERA
6byy_C2e-12192190MEF2 CHIMERA
6byy_D2e-12192190MEF2 CHIMERA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231550.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
TrEMBLA0A166EB990.0A0A166EB99_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.23e-78AGAMOUS-like 30