PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007166
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 630aa    MW: 69391.1 Da    PI: 9.1442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007166genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-16102147147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed++l d+v+++G+ +W++Ia++m   R++k+c++rw++ 
      DCAR_007166 102 RGHWRPAEDKKLRDLVALYGPQNWNLIAEKME-ARSGKSCRLRWFNQ 147
                      899*****************************.***********996 PP
2Myb_DNA-binding543.9e-17154197146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++ +eE+e+l  a++++G++ W++Iar ++ gRt++ +k++w+ 
      DCAR_007166 154 RGAFNEEEEERLMAAHRMYGNK-WALIARFFP-GRTDNAVKNHWHV 197
                      899*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.33297148IPR017930Myb domain
SMARTSM007171.0E-12101150IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-27102195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-25103155IPR009057Homeodomain-like
PfamPF139211.1E-15105165No hitNo description
CDDcd001672.61E-12105146No hitNo description
PROSITE profilePS5129426.923149203IPR017930Myb domain
SMARTSM007174.2E-14153201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-20156202IPR009057Homeodomain-like
CDDcd001675.27E-11156196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MANKCVAHVS PVRAPNTNNI GASSVYYHPS LSSSSSKGII LHDMDALSIS NSKSSFQFED  60
GRASSYSPNM MGKKSCTPRN NLEGNGFHDS SSSCGQSKMC SRGHWRPAED KKLRDLVALY  120
GPQNWNLIAE KMEARSGKSC RLRWFNQLDP RINRGAFNEE EEERLMAAHR MYGNKWALIA  180
RFFPGRTDNA VKNHWHVAMA RKYREQSSAS RRGKLSLTAF CTKSMGFQEK PTSTLKKPSS  240
QPFYHTTSSI SRQSALHAPG LYPVSVMSSN EVQESQSKYH VEETSTAPPF IDFLGGNYNH  300
LKLDNFTSLL SDCASASKRR RHTLQSQGNS AIPVFKENIT GQVDGNNDDS SGKGQRSGSS  360
RTPMSHSTNF SSIEQRSTIS RTLPSNCPNY TSMGFSTPSS RITLSNITNL NSPGMNSTMH  420
LNNDDVLMSE SNGQSQPEGP SVNKLSRAGI GPFKSTGSNT PYHPRIEDVL VKGTAFKRPS  480
ESRIPLSNIT NLNKEGNNTS LHCNNYDVHM SSSNVTSQTL ATPVNKQSRT TKIRAPPRKK  540
DPIISRKSKK FDAEKLAQCS SQLFGDIRND SSVPIEETDD DFDLLNDDDD VEDNIFVPDE  600
GIPTDSGIET APNLLFATNV ALIINNEKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-301022027107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A161XH450.0A0A161XH45_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.15e-67myb domain protein 117