PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007141
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35295.9 Da    PI: 6.6051
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007141genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-18100153356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq+++Le+ Fe+ +++  +++ eLA+ lgL+ rq+ +WFqNrRa++k
  DCAR_007141 100 KKRRLNMEQVRTLEKSFEMGNKLEPDRKLELARALGLQPRQIAIWFQNRRARWK 153
                  456899***********************************************9 PP
2HD-ZIP_I/II133.76.5e-43100191293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl+ eqv++LE+sFe+ +kLep+rK elar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lk+++da+k+en++L++++++L++++++
  DCAR_007141 100 KKRRLNMEQVRTLEKSFEMGNKLEPDRKLELARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKSQFDAVKAENDSLQSHNQKLHAQIMA 191
                  9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-2085157IPR009057Homeodomain-like
PROSITE profilePS5007116.97395155IPR001356Homeobox domain
SMARTSM003893.4E-1998159IPR001356Homeobox domain
PfamPF000461.2E-15100153IPR001356Homeobox domain
CDDcd000861.33E-15100156No hitNo description
Gene3DG3DSA:1.10.10.602.0E-19102162IPR009057Homeodomain-like
PRINTSPR000316.1E-6126135IPR000047Helix-turn-helix motif
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PRINTSPR000316.1E-6135151IPR000047Helix-turn-helix motif
PfamPF021839.4E-16155194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDFFPANFML HHHQEQDHRR NHIQNPASQF IDSSQNLLPP QDFHGTIGSF LGKRSMSFSG  60
GDHHQQQLNE ESNIHGDHVD DLSDPEDDDG SGTVGSGGSK KRRLNMEQVR TLEKSFEMGN  120
KLEPDRKLEL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDLLKSQFDA VKAENDSLQS  180
HNQKLHAQIM ALKNGEPTES INLNKETEGS SSNRSTENSS EIKPDFSRTS PAIDSHPHKL  240
TSIPLFPPPN NNNKSSFFRL QQPAAFHMSR PSDHPHQQSV KEEHFCNMFT GVEDQTAFWP  300
WLEQQPFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDARKUROD0.0D26576.1 Daucus carota mRNA for DNA-binding protein (transcriptional regulator), complete cds, CHB4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231477.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC033e-87ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A166EAG10.0A0A166EAG1_DAUCS; Uncharacterized protein
TrEMBLQ434280.0Q43428_DAUCA; DNA-binding protein
STRINGXP_009593379.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]
  5. Kawahara R,Komamine A,Fukuda H
    Isolation and characterization of homeobox-containing genes of carrot.
    Plant Mol. Biol., 1995. 27(1): p. 155-64
    [PMID:7865785]