PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007131
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35880 Da    PI: 4.4019
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007131genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-1893146356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa+ k
  DCAR_007131  93 KKRRLTVDQVKLLEKSFEVENKLEPERKFQLAKDLGLQPRQVAIWFQNRRARFK 146
                  56689***********************************************98 PP
2HD-ZIP_I/II129.51.4e-4192183192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ +qvklLE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++Lk++yd+lk + ++L+k++++Lr e++
  DCAR_007131  92 EKKRRLTVDQVKLLEKSFEVENKLEPERKFQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYDVLKESYDKLKVDYDSLSKDNKKLRLEVE 183
                  69**************************************************************************************8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-1979150IPR009057Homeodomain-like
PROSITE profilePS5007117.11988148IPR001356Homeobox domain
SMARTSM003895.1E-1791152IPR001356Homeobox domain
CDDcd000864.05E-1693149No hitNo description
PfamPF000462.3E-1593146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1895155IPR009057Homeodomain-like
PRINTSPR000312.1E-5119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000312.1E-5128144IPR000047Helix-turn-helix motif
PfamPF021831.1E-15148189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEIDKVYDGA DDVLLPTESL PPSSAASQFL DSFWISKSSP SFQGDSVSGS ADMVNFQNSP  60
PEDAAGLEGL IPVMEKGEGG NEDYDPGFHQ PEKKRRLTVD QVKLLEKSFE VENKLEPERK  120
FQLAKDLGLQ PRQVAIWFQN RRARFKTKQL EKDYDVLKES YDKLKVDYDS LSKDNKKLRL  180
EVESLKEKKR LERQNVTSSV VPEPAKLPLS SPISQNEISA NVITIKQEDA NSAKSDVLDS  240
ESPHYADANH ISIFKPVDSS RVLEQDLSDF SQDEDDDLCR ILPASCLPKL KIESYDDLTA  300
DPCNLGTSVD EQTFWFWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARFKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231780.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_017231781.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A166EA770.0A0A166EA77_DAUCS; Uncharacterized protein
STRINGXP_009594284.19e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-51homeobox 1