PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007054
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 373aa    MW: 41304 Da    PI: 8.3111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007054genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1761110255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +gr++AeIrdps+   + r +lg+f+taeeAa a++ a+++++g
  DCAR_007054  61 RYRGVRRRP-WGRYAAEIRDPSS---KERRWLGTFDTAEEAACAYDCAARAMRG 110
                  59*******.**********954...4999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1061110IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2161118IPR016177DNA-binding domain
CDDcd000181.70E-3061117No hitNo description
SMARTSM003802.0E-3461124IPR001471AP2/ERF domain
PROSITE profilePS5103221.98361118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2961117IPR001471AP2/ERF domain
PRINTSPR003672.1E-96273IPR001471AP2/ERF domain
PRINTSPR003672.1E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEEAMRKLNA GYFINPYIPE PIPEPSFFEP PSSNQNKKCG TNGTNKRSLK DSANGGSAAM  60
RYRGVRRRPW GRYAAEIRDP SSKERRWLGT FDTAEEAACA YDCAARAMRG VKARTNFVYP  120
VSDDSVTPPS LFHYDKQSQP SIHHFASNHF FSPSFSNSAP DAANSFSVPA PQSNNSSPTN  180
MLLLRDFITS CNASSQQSFP ILNSNKTAAS TVAHTVKNSH SSRTTKLKSP QAKLETNTPT  240
KVTKKPANDE DFMDFFSPEP SDSGLLQEIL NGFFPKPEKS ESKNDDHHHL QQQLHTTSSF  300
SVPAVLPSTK QLMMNETANT QFGLHFQNYQ TLGEPQFGTY RNEIPVMPPY YNGIPAVAPP  360
ESYPMFGIGE II*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1956117971Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234415.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A166E8660.0A0A166E866_DAUCS; Uncharacterized protein
STRINGcassava4.1_026470m7e-66(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-23DORNROSCHEN-like