PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006849 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 30770.5 Da PI: 8.1347 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 122 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + k r++lg++ t+ eAaka+++a+ kl+g DCAR_006849 122 HYRGVRKRP-WGKFAAEIRDP---KrKGSRIWLGTYVTPIEAAKAYDKAAYKLRG 172 7********.**********8...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 121 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.446 | 122 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 122 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.74E-18 | 122 | 180 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-21 | 122 | 182 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-34 | 122 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-13 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-13 | 162 | 182 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MATATETSAL DLIERHLFLD IFSPVVDSSQ LEEYAKFLAS DPSSSPISSS SSSCFSSSSI 60 SLSSIQINSC TTNSTHQNNP SEHHLSRDEK LVDFTNIDSW SKKNKVNPSR GCNKSGEIDF 120 RHYRGVRKRP WGKFAAEIRD PKRKGSRIWL GTYVTPIEAA KAYDKAAYKL RGSKAILNFP 180 LEIAKSSGLP NKHENEEIKK ANKENKERVL VQPKVCDNNS SGEVCQPPLE SRFASFCWPG 240 SMDLWGDGEM SMLDFPLLSP SSHYYPSIES QHRMV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 121 | 183 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233556.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A166E2S5 | 0.0 | A0A166E2S5_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006849 |