PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 304aa MW: 34092.3 Da PI: 8.7118 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.1e-19 | 140 | 194 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k DCAR_006848 140 RKKLRLSKDQAAILEDSFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 194 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.9 | 2.1e-41 | 140 | 229 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev++Lr +l DCAR_006848 140 RKKLRLSKDQAAILEDSFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQDLR-AL 229 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.5E-26 | 5 | 114 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 1.37E-18 | 130 | 197 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 131 | 190 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 136 | 196 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-16 | 138 | 200 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.10E-14 | 140 | 197 | No hit | No description |
Pfam | PF00046 | 2.6E-16 | 140 | 194 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.1E-5 | 167 | 176 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 171 | 194 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 176 | 192 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.1E-26 | 196 | 239 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.0E-11 | 196 | 230 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MMIHQREDHL GLTLSLNFQT GTHQPSLSSS PLQLNQTPSL ASSSTHSHFN LHNTTTLTKQ 60 TSDRSLFETC RVETRSFLKG IDVNRLPTMT VDMEEEAGVS SPNSTISSVS GKRRSLERSE 120 LGNNSDDLID CDDEDGDNSR KKLRLSKDQA AILEDSFKEH NTLNPKQKLA LAKRLGLRPR 180 QVEVWFQNRR ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVQDLRALK SSPQFYMQMA 240 PPTTLTMCPS CERVSAPVSS AASPSTTPVQ PLHSGSSHHR VPFNPWAIKP AAQQLLNATH 300 HRP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 144 | SRKKLRL |
2 | 188 | 196 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X94449 | 1e-117 | X94449.1 P.brachycarpa mRNA for homeobox-leucine zipper protein (PHZ4). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232361.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT4 | ||||
Swissprot | P46600 | 6e-92 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A166E2R7 | 0.0 | A0A166E2R7_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_013177m | 1e-119 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-82 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006848 |
Publications ? help Back to Top | |||
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