PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006829
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28531.7 Da    PI: 4.1623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006829genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-21957149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krie    rqvtfskRrng++KKA+EL+vL +a++a+++ s+ +++y +
  DCAR_006829  9 KRIELRKSRQVTFSKRRNGLFKKASELCVLAGAQIAILVQSPGNHVYAF 57
                 7999999****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.7E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.936161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-26176IPR002100Transcription factor, MADS-box
CDDcd002652.77E-32273No hitNo description
PRINTSPR004042.0E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRRKIEMKR IELRKSRQVT FSKRRNGLFK KASELCVLAG AQIAILVQSP GNHVYAFGHP  60
DVDSVIDAYL GNNVSNSLMK NSLLEEYNDK YLEMAYELEA EKNKLDDVEE SGESWWENSF  120
EDLEIDELEN YIESMEKLKN NVLKRADELR NLAVSPSFDT NTNASNVDGL LDDQVALPDL  180
DDQVVLPNLD EFLPYEVGVT NADMMMMQAF HNSIGFNNYS FGYGELFFDD GGDGNNQVSS  240
DSGTFGVPDV KHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233553.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A166E2840.0A0A166E284_DAUCS; Uncharacterized protein
STRINGMigut.B00482.1.p2e-38(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-39AGAMOUS-like 62