PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006798
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 269aa    MW: 30371 Da    PI: 4.6028
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006798genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.9e-192977149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ien  ++qvtfskRr+g++ KA+EL+vL++ae+++++ s   ++y +
  DCAR_006798 29 KKIENPGRKQVTFSKRRAGLFNKASELCVLTGAEILILVQSVGSRVYAF 77
                 68**************************************999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-252180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1562181IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-222294IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-152343IPR002100Transcription factor, MADS-box
PfamPF003196.2E-183077IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-154358IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-155879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTMKKTGCSS SQETVPMKKT RGRQKIEIKK IENPGRKQVT FSKRRAGLFN KASELCVLTG  60
AEILILVQSV GSRVYAFGHP NVDSLIDTYL GNNVSNSPPV DENSACMYEE YNKKYLEIAK  120
EMEVEKIKSN NVEESGEFWW QRSFEDLEMD ELDCYIKSME ELKNNATRRA DELRNSVEGL  180
LLDDQIMLPN LDQFVPHNVG FADDSLMMQP VNYDPSGFNG YSFVNGELVS DSHDYFKNHG  240
GDDLQVQTDY GALGARDDLY YGPDHIGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-1423941889PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-1423941889PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233553.13e-85PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A166E1J60.0A0A166E1J6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-34AGAMOUS-like 62