PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006770
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 288aa    MW: 33131.4 Da    PI: 6.6797
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006770genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-072362692154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp+++++++L + +gL+ +q+ +WF N+R +
  DCAR_006770 236 KWPYPTEDDKAKLVEDTGLQLKQINNWFINQRKR 269
                  469*****************************87 PP
2ELK25.23.8e-09190211122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK +L++++++++ ++++E++
  DCAR_006770 190 ELKIELKQGFRSKIEDVREEIL 211
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-192569IPR005540KNOX1
PfamPF037908.8E-182668IPR005540KNOX1
SMARTSM012561.4E-2679134IPR005541KNOX2
PfamPF037912.9E-2082133IPR005541KNOX2
PROSITE profilePS512139.097190210IPR005539ELK domain
PROSITE profilePS5007111.564210273IPR001356Homeobox domain
SuperFamilySSF466897.7E-16212278IPR009057Homeodomain-like
SMARTSM003898.4E-11212277IPR001356Homeobox domain
CDDcd000869.20E-11213274No hitNo description
Gene3DG3DSA:1.10.10.606.5E-26217276IPR009057Homeodomain-like
PfamPF059203.3E-17230269IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMQDQNMNMM GSSSGSHDYS GEQNHRMKAE IATHPLYEQL VAAHVACLRV ATPIDQLPLI  60
DAQLANSHNI LRTYASQHHH LHPHQRQELD NFMGQYLMVL CSFKEQLQQH VRVHAVEAVM  120
ACREIEQNLQ SLTGVTLGEG TEATMSDDDE ELQMDFSLDQ SGSDAHDMMG FGPLLPTESE  180
RSLMERVRQE LKIELKQGFR SKIEDVREEI LRKRRAGKLP GDTTSVLKEW WQQHSKWPYP  240
TEDDKAKLVE DTGLQLKQIN NWFINQRKRN WHSNSSSMTS LKSKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12213277872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266286RKRNWHSNSSSMTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231499.10.0PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-164KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A162AU440.0A0A162AU44_DAUCS; Uncharacterized protein
STRINGGorai.003G163800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-154KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]