PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006761
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 183aa    MW: 19618.9 Da    PI: 5.5931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006761genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-171968155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+G+r  +++g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  DCAR_006761 19 PVYRGIR--SRSGKWVSEIREPRK---TTRIWLGTFQTPEMAAAAYDVAALALKG 68
                 68****6..678*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-91968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-272077IPR001471AP2/ERF domain
SMARTSM003803.4E-282082IPR001471AP2/ERF domain
PROSITE profilePS5103219.9022076IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-182077IPR016177DNA-binding domain
CDDcd000181.92E-172178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MPTSSSAGSA SRPATGKHPV YRGIRSRSGK WVSEIREPRK TTRIWLGTFQ TPEMAAAAYD  60
VAALALKGSE AVINFPNHVH WYPVPGSASP TAIRNAAGAA AALIGSESAE RSLVSAAEVE  120
YSRASNVCTE MGDHEFIDEE ALFDPNLLAD MAEGMLMTPP RLNSPPQQNS PPDYYDSLWG  180
HF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-161480167ATERF1
3gcc_A8e-161480167ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234261.11e-133PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9SJR01e-41ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A166E0L01e-131A0A166E0L0_DAUCS; Uncharacterized protein
STRINGXP_010278525.11e-57(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-35ERF family protein