PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_006726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 130aa MW: 15267.4 Da PI: 9.8588 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 35 | 88 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k DCAR_006726 35 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 88 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 135.8 | 1.5e-43 | 34 | 124 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy+ Lkr++dalk++n++L++e+++L+ e+ DCAR_006726 34 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLERDYDILKRQFDALKADNDSLKSENKKLHGEV 124 69*************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-20 | 25 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-18 | 33 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.80E-14 | 35 | 91 | No hit | No description |
Pfam | PF00046 | 7.9E-16 | 35 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-20 | 37 | 97 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-6 | 61 | 70 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-6 | 70 | 86 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.9E-16 | 90 | 124 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MMMGRSMSFT GMERCEEVRG EDEMSDDGSQ SLGEKKRRLN LEQVKALEKS FELGNKLEPE 60 RKMQLARALG LQPRQIAIWF QNRRARWKTK QLERDYDILK RQFDALKADN DSLKSENKKL 120 HGEVTWIYN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 82 | 90 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232162.1 | 1e-90 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 1e-59 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A161XG31 | 2e-89 | A0A161XG31_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0017s11800.1 | 2e-67 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15150.1 | 6e-62 | homeobox 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_006726 |