PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006726
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 130aa    MW: 15267.4 Da    PI: 9.8588
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006726genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-183588356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  DCAR_006726 35 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 88
                 4557899**********************************************9 PP

2HD-ZIP_I/II135.81.5e-4334124191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy+ Lkr++dalk++n++L++e+++L+ e+
  DCAR_006726  34 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLERDYDILKRQFDALKADNDSLKSENKKLHGEV 124
                  69*************************************************************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-202592IPR009057Homeodomain-like
PROSITE profilePS5007116.9083090IPR001356Homeobox domain
SMARTSM003898.9E-183394IPR001356Homeobox domain
CDDcd000861.80E-143591No hitNo description
PfamPF000467.9E-163588IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-203797IPR009057Homeodomain-like
PRINTSPR000313.5E-66170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000313.5E-67086IPR000047Helix-turn-helix motif
PfamPF021831.9E-1690124IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MMMGRSMSFT GMERCEEVRG EDEMSDDGSQ SLGEKKRRLN LEQVKALEKS FELGNKLEPE  60
RKMQLARALG LQPRQIAIWF QNRRARWKTK QLERDYDILK RQFDALKADN DSLKSENKKL  120
HGEVTWIYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232162.11e-90PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004661e-59HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A161XG312e-89A0A161XG31_DAUCS; Uncharacterized protein
STRINGPOPTR_0017s11800.12e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.16e-62homeobox 3