PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006584
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 252aa    MW: 27928.1 Da    PI: 4.6299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006584genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19125175255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  DCAR_006584 125 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDKAALRIRG 175
                  7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32124184IPR001471AP2/ERF domain
CDDcd000185.48E-32125183No hitNo description
PfamPF008471.2E-14125175IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-23125184IPR016177DNA-binding domain
SMARTSM003804.9E-38125189IPR001471AP2/ERF domain
PROSITE profilePS5103223.907125183IPR001471AP2/ERF domain
PRINTSPR003672.9E-11126137IPR001471AP2/ERF domain
PRINTSPR003672.9E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAVKKDVIPS SSGAILENVW ANFIGCSNLE SRDEPDVFQT WNEMPMLDDN SSGDGVVNML  60
QRLPSLGRWI SMGSEAWETI LDEYAALPSN AENGYKTSNQ KSESAESGDH VKKGDQKVER  120
IISRHYRGVR RRPWGKYAAE IRDSSRKGAR VWLGTFETAE EAALAYDKAA LRIRGPKAHL  180
NFPLEKVTQG ATTTEPSQSH LSCSSEDLVM AGTHETEKMV CLEETYANDQ LDVVEFQDLG  240
SDYLESLMST L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29124184161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234631.10.0PREDICTED: ethylene-responsive transcription factor ERF098
TrEMBLA0A161Y8C70.0A0A161Y8C7_DAUCS; Uncharacterized protein
STRINGPOPTR_0011s06020.19e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.16e-37ERF family protein