PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WOX | ||||||||
Protein Properties | Length: 355aa MW: 39148.6 Da PI: 8.2933 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.7e-17 | 43 | 103 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ +l ++ +++V++WFqNr+ + k+ DCAR_006582 43 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRVQLqeygQVGDANVFYWFQNRKSRSKN 103 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 111.3 | 5.1e-36 | 42 | 105 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R+++kq DCAR_006582 42 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRVQLQEYGQVGDANVFYWFQNRKSRSKNKQ 105 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-12 | 38 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.527 | 39 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 41 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-8 | 42 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 42 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.5E-15 | 43 | 102 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MAASNRHWPS MFKSKPHLHQ WQQHEHHRTL LSSGCEERSN EPKPRWNPKP EQIRILEAIF 60 NSGMVNPPRD EIRRIRVQLQ EYGQVGDANV FYWFQNRKSR SKNKQQRSNK TNPHAHTPIS 120 SALSTMVPPS SSSSSSDKSS HKSSTIAPFS LNISPDGSSL NSPTPSVNQP FSHHFHPNGE 180 FVQEPFFFPV LSGGDHGGAF TQGFSFPEIS TNVITQASPV SDEQTGRSYS NLLLTDLMMN 240 VGPVNYKKAE DGKNKALQQQ EICSYSTPPA TMSTNFTSLS PNGVPSPINH VQGAGKSTVI 300 INDVGFEVAS GPLNVKEVFG EDAVLIHSSG QPVVTNEWGF TLQPLQHGAF YYLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234528.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9-like isoform X1 | ||||
Swissprot | Q6X7J4 | 6e-79 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A161X466 | 0.0 | A0A161X466_DAUCS; Uncharacterized protein | ||||
STRING | EOY28117 | 1e-109 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5942 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 8e-80 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006582 |
Publications ? help Back to Top | |||
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