PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 17146.5 Da PI: 8.662 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.5e-19 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +grWv+eIr+p++ +kr++lg+f tae+Aa+a++ a l+g DCAR_006520 27 GYRGVRQRH-WGRWVSEIREPRK---KKRIWLGSFKTAEMAARAHDVACFHLRG 76 8*******9.**********843...6*******************99888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-33 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 27 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-22 | 27 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.88E-32 | 28 | 84 | No hit | No description |
PRINTS | PR00367 | 2.1E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MNSTKVTSKN VLKSQGKCVE NSRQSNGYRG VRQRHWGRWV SEIREPRKKK RIWLGSFKTA 60 EMAARAHDVA CFHLRGDKSL LNFPQEIEFL PRPCSSDPKD IRAASCQAAG LRTVGIDKEE 120 GNASGDDFWT ELELPELLDF DILFNDVLVV P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 28 | 87 | 6 | 66 | ATERF1 |
3gcc_A | 3e-18 | 28 | 87 | 6 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234491.1 | 1e-110 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 3e-38 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A162ATI6 | 1e-109 | A0A162ATI6_DAUCS; Uncharacterized protein | ||||
STRING | VIT_15s0046g00310.t01 | 6e-41 | (Vitis vinifera) | ||||
STRING | Migut.N01538.1.p | 5e-41 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13874 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 1e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006520 |
Publications ? help Back to Top | |||
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