PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ARF | ||||||||
Protein Properties | Length: 798aa MW: 89051.7 Da PI: 6.905 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64 | 2.4e-20 | 129 | 243 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE...............EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.............rkksgryvltkGWkeFvkangLkegD 78 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+ ++++r++lt+GW+ Fv +++L +gD DCAR_006517 129 FCKVLTASDTSTHGGFSVLRKHANEClppldmtQ--ATPTQELVAKDLHGTEWRFKHIFrditsmaesvyktPGQPRRHLLTTGWSTFVTSKRLVAGD 224 99****************************9543..445569***************999999999999766666667******************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 ++vF + +++el+v+v+r+ DCAR_006517 225 SFVFL--RGENKELRVGVRRH 243 *****..3489999*****97 PP | |||||||
2 | Auxin_resp | 98.2 | 1.1e-32 | 268 | 347 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+k+ ++vG Rfkm+fe+e+s+err++Gt+vgv+d+++ +W+ SkWrsLk DCAR_006517 268 ASHAVATQTLFVVFYKPRT--SQFIIGLNKYLEAVKNGYTVGVRFKMRFEGEESPERRFTGTIVGVEDVSS-QWKCSKWRSLK 347 789***************6..9**********************************************888.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-36 | 120 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-39 | 121 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.59E-18 | 127 | 242 | No hit | No description |
SMART | SM01019 | 9.7E-17 | 129 | 244 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.223 | 129 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-18 | 129 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.1E-31 | 268 | 347 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.0E-8 | 506 | 642 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.14E-13 | 601 | 682 | No hit | No description |
PROSITE profile | PS51745 | 27.275 | 606 | 687 | IPR000270 | PB1 domain |
Pfam | PF02309 | 9.4E-6 | 652 | 690 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 798 aa Download sequence Send to blast |
MANLGCISQP HLLSQGNNGG MEDMYTELWK ACAGPLVDIP RNGERVYYFP QGHMEQLEAS 60 TNQELNQSIP LFELPNKILC RVVHVQLKAE QETDEVYAQI TLLPEPRQNE PISPDSCHPE 120 PPRTAVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM TQATPTQELV AKDLHGTEWR 180 FKHIFRDITS MAESVYKTPG QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GENKELRVGV 240 RRHAQQQSSM PSSVISSQSM HLGVLATASH AVATQTLFVV FYKPRTSQFI IGLNKYLEAV 300 KNGYTVGVRF KMRFEGEESP ERRFTGTIVG VEDVSSQWKC SKWRSLKVQW DEPASIARPE 360 RVSPWEIEPF VASVPPSLSQ TAPVKNKRPR PPSEISALGK TTVPVIQSNP KRSISIILDS 420 IVHDSCTTGV VEPTSTAVSA AWNPSHDSSQ LNVSLEGQRT DSNVYRQPMQ SAKYSNLTTE 480 SSHVRAPWSK ISDENEDSKS ASAWSVQRSF TNQNPTYQYN EQLPLPVEEK KSDAVTTCRL 540 FGFDLKSSTD AAKKVTPLTP VNVFIKAADG GDSEEKSELS KDSKMKHQGL QVSPKEVQSK 600 QNCSTRSHTK VQMQGIAVGR AVDLSVLRGY DELISELEEM FDIKGQLYPR DQWEIVFTDD 660 EGDMMLMGDD PWQEFCDMVK RILICSSQDV KKMRVGMKLP ISSTDHEVSG FSLDSAISLI 720 ELDRLTKFRS GKATVLGTLV RQPVVFQFFY HLSFSFYLHT VNTISSDYSS NEHNAQGWGT 780 GPLSVKSVKE IAGFDFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-175 | 14 | 370 | 7 | 355 | Auxin response factor 1 |
4ldw_A | 1e-175 | 14 | 370 | 7 | 355 | Auxin response factor 1 |
4ldw_B | 1e-175 | 14 | 370 | 7 | 355 | Auxin response factor 1 |
4ldx_A | 1e-174 | 14 | 370 | 7 | 355 | Auxin response factor 1 |
4ldx_B | 1e-174 | 14 | 370 | 7 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 386 | 390 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017235679.1 | 0.0 | PREDICTED: auxin response factor 9 isoform X2 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A166DU43 | 0.0 | A0A166DU43_DAUCS; Auxin response factor | ||||
STRING | VIT_02s0025g01740.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006517 |