PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006436

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

M-type_MADS

Protein Properties

Length: 540aa MW: 61764.6 Da PI: 8.5899

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006436	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.3	2.2e-09	12	45	11	44
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstg 44 tf R +++ K eEL +LC+++v vii+++++ DCAR_006436 12 NTFRDRSATLKRKVEELATLCGVKVVVIIYGPKQ 45 59*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.66E-10	1	83	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.363	1	44	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-9	4	44	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MELIKKDKVL NNTFRDRSAT LKRKVEELAT LCGVKVVVII YGPKQGTSSP IVPEVWPQDR 60 DQVVELIDKY RGQSAEDRAN RTTLVSDLFK ERNKKAEKDL KEARKKRIQA KYPTALDPVF 120 DGFREDEIRN SVVFLQSKID NAKAKLEQMK ANNSIRRACH VQQQGVMLSK KRSLDLDAGN 180 QANKYMKRHP HEAIAEPMRV PVAPMPLQIQ HQRFPVPDYD QNRVMLRFVD GYVGGASNMM 240 HNAPLRQVVY GYPRMEGTLD SINYANNLAM VPQNYYGEGI QPIAQQVLEY HPMPQESSSH 300 QMAAASHQYY QDVNFLVTVF WNNGSRRKKI NVRIGQNLSD ILRFYDKSTC VRITKFEELL 360 DVGCRLLVGF QQALVFLRKP SIAKSSNLVE SIIKANATRR VSSYVEAGCV NTHNRVQNMN 420 KSKDTVNELE ALVEDITVEL SAENLAHLQL EDTTHLPGTT SDEELILSSE PRKVEITDYA 480 TMMAVIYSMV KQDYFMQEKI VSALNLNSSF EELESYSLMW SLRPYIDDEV MHQAWRLIH*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MELIKKDKVL NNTFRDRSAT LKRKVEELAT LCGVKVVVII YGPKQGTSSP IVPEVWPQDR  60
DQVVELIDKY RGQSAEDRAN RTTLVSDLFK ERNKKAEKDL KEARKKRIQA KYPTALDPVF  120
DGFREDEIRN SVVFLQSKID NAKAKLEQMK ANNSIRRACH VQQQGVMLSK KRSLDLDAGN  180
QANKYMKRHP HEAIAEPMRV PVAPMPLQIQ HQRFPVPDYD QNRVMLRFVD GYVGGASNMM  240
HNAPLRQVVY GYPRMEGTLD SINYANNLAM VPQNYYGEGI QPIAQQVLEY HPMPQESSSH  300
QMAAASHQYY QDVNFLVTVF WNNGSRRKKI NVRIGQNLSD ILRFYDKSTC VRITKFEELL  360
DVGCRLLVGF QQALVFLRKP SIAKSSNLVE SIIKANATRR VSSYVEAGCV NTHNRVQNMN  420
KSKDTVNELE ALVEDITVEL SAENLAHLQL EDTTHLPGTT SDEELILSSE PRKVEITDYA  480
TMMAVIYSMV KQDYFMQEKI VSALNLNSSF EELESYSLMW SLRPYIDDEV MHQAWRLIH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	106	KKAEKDLKEARKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A166DRV6	0.0	A0A166DRV6_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-16	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	DCAR_006436