PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006434
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 656aa    MW: 72292.4 Da    PI: 6.9696
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006434genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.2e-24116217199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   +++ 
  DCAR_006434 116 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGQVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGD 209
                  89****************************986445444..8999*********************************************3..47888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  DCAR_006434 210 LCVGIRRA 217
                  8****996 PP
2Auxin_resp111.58e-37270352283
   Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a +++++++FevvY+Prast+eF vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+  dp+rWpnS+Wr+L+
  DCAR_006434 270 AARVAEGQAFEVVYYPRASTPEFFVKASSVKAAMRIHWCSGMRFKMPFETEDSSRISWfMGTISSVHVDDPIRWPNSPWRLLQ 352
                  778999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-38106219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-30110219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-22115216No hitNo description
SMARTSM010197.2E-22116218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239116218IPR003340B3 DNA binding domain
PfamPF023624.0E-22116217IPR003340B3 DNA binding domain
PfamPF065072.8E-31270352IPR010525Auxin response factor
PROSITE profilePS5174519.171569652IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MNRPLNEQEK CLDSQFWHAC AGGMVQMPQV NSKVYYFAQG HIEHAQEINV DFKNLPRVPP  60
LVLCRVSGIK FMADIETDEV YAKVRLVPLR SSEIKYDEEG FVGFDKSQGE EKSASFAKTL  120
TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTILAKD VHGQVWKFRH IYRGTPRRHL  180
LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKRG IGGGLESPCG WNTSNCAPRY  240
GGFLGHASGA FDGGESGTRK VSGESVSEVA ARVAEGQAFE VVYYPRASTP EFFVKASSVK  300
AAMRIHWCSG MRFKMPFETE DSSRISWFMG TISSVHVDDP IRWPNSPWRL LQVAWDEPDL  360
LQNVKRVNPW LVELVSNMPA IHQSPFSPPR KKLRVPQPPD CSLLGQLSMP SVLSNPLNIP  420
AGIQGARHAQ YGLFTQDPHF HKLQSGLFPF GFQQLDYAAA LPSKIPIHEF NKPPENNENI  480
SCLLTIGNSS PSSNNNGKSK ATHSFYLFGQ PILTEQQISQ SCSGDTVGSS SLNGIANPSD  540
GSGSAVIQNG TLDSSSDEQK SGFSETDTTG HCKVFMESED VGRTLDLSAL GSYDELYRKL  600
LNMFSLEKSE MLSNVLYRDE AGAVKHTGDE PFSNFTKTAR RLTILMDSSS DNMGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-801237351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232520.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A161Y7W70.0A0A161Y7W7_DAUCS; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]