PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006395

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 405aa MW: 45363.8 Da PI: 4.7608

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006395	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.6e-52	26	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L +++++++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd+ v + k DCAR_006395 26 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVTEIDVYKSEPWELAghSSLNTRDMEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRCVRH-K 121 579***********************99.88**********85347778899*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ge++g+kktLvf++grap+g++t+Wvmheyrl DCAR_006395 122 GETIGMKKTLVFHSGRAPDGQRTNWVMHEYRL 153 99**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-60	23	178	IPR003441	NAC domain
PROSITE profile	PS51005	57.748	26	178	IPR003441	NAC domain
Pfam	PF02365	3.2E-28	28	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDRDFMAAPA AASPPIVSPA PVNKSLAPGF RFHPTDEELV RYYLRRKACG KPFRFQAVTE 60 IDVYKSEPWE LAGHSSLNTR DMEWYFFSPV DRKYGNGSRL NRATGKGYWK ATGKDRCVRH 120 KGETIGMKKT LVFHSGRAPD GQRTNWVMHE YRLVDIELQQ AGVAQEKDAF VLCRIFQKSG 180 LGPPNGDRYA PFIEEEWEDD AALFVPGGEA EEDVANASEG RTGVNDIEQI PDEDKAPLPS 240 ESLIDHQTIP FVCKRERTED QPMNDEADPE PLSMLFEPKR AKQSDPNSSH QNGSEDSTTS 300 QEPTTAPMSL ALMVFPLLEN VGTETSTQQV NPPTFDADNL EKSVPPGYLK FISNLENEIL 360 SVSMERETLK IEVMRAQAMI NILQSHIEVL TKDNEDLKRA AQSK*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDRDFMAAPA AASPPIVSPA PVNKSLAPGF RFHPTDEELV RYYLRRKACG KPFRFQAVTE  60
IDVYKSEPWE LAGHSSLNTR DMEWYFFSPV DRKYGNGSRL NRATGKGYWK ATGKDRCVRH  120
KGETIGMKKT LVFHSGRAPD GQRTNWVMHE YRLVDIELQQ AGVAQEKDAF VLCRIFQKSG  180
LGPPNGDRYA PFIEEEWEDD AALFVPGGEA EEDVANASEG RTGVNDIEQI PDEDKAPLPS  240
ESLIDHQTIP FVCKRERTED QPMNDEADPE PLSMLFEPKR AKQSDPNSSH QNGSEDSTTS  300
QEPTTAPMSL ALMVFPLLEN VGTETSTQQV NPPTFDADNL EKSVPPGYLK FISNLENEIL  360
SVSMERETLK IEVMRAQAMI NILQSHIEVL TKDNEDLKRA AQSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	25	178	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	25	178	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	25	178	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	25	178	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	25	178	19	168	NAC domain-containing protein 19
3swm_B	2e-52	25	178	19	168	NAC domain-containing protein 19
3swm_C	2e-52	25	178	19	168	NAC domain-containing protein 19
3swm_D	2e-52	25	178	19	168	NAC domain-containing protein 19
3swp_A	2e-52	25	178	19	168	NAC domain-containing protein 19
3swp_B	2e-52	25	178	19	168	NAC domain-containing protein 19
3swp_C	2e-52	25	178	19	168	NAC domain-containing protein 19
3swp_D	2e-52	25	178	19	168	NAC domain-containing protein 19
4dul_A	2e-52	25	178	16	165	NAC domain-containing protein 19
4dul_B	2e-52	25	178	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236344.1	0.0	PREDICTED: NAC domain-containing protein 78 isoform X1
TrEMBL	A0A166DQT8	0.0	A0A166DQT8_DAUCS; Uncharacterized protein
STRING	XP_009619467.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3140	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	1e-105	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	DCAR_006395