PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006329
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 510aa    MW: 55993.8 Da    PI: 5.1296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006329genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
      DCAR_006329 40 KGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87
                     79******************************************9986 PP

2Myb_DNA-binding49.11.3e-1593136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E+ +++++++++G++ W++ a++++ gRt++++k++w++
      DCAR_006329  93 KGSFTPDEERRIIELHAKMGNK-WARMAAELP-GRTDNEIKNFWNT 136
                      799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.383587IPR017930Myb domain
SMARTSM007175.0E-153989IPR001005SANT/Myb domain
SuperFamilySSF466892.28E-2939134IPR009057Homeodomain-like
PfamPF002492.5E-154087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-244194IPR009057Homeodomain-like
CDDcd001671.13E-114287No hitNo description
PROSITE profilePS5129425.28888142IPR017930Myb domain
SMARTSM007171.0E-1592140IPR001005SANT/Myb domain
PfamPF002491.1E-1493136IPR001005SANT/Myb domain
CDDcd001672.18E-1195136No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2595141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSNRTNESED KMEANDYMDS PSTEEATSEG NMTGGGLLKK GPWTSAEDAI LVDYVEKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPD LKKGSFTPDE ERRIIELHAK MGNKWARMAA  120
ELPGRTDNEI KNFWNTRIKR RQRAGLPIYP PDICSQSFDE NSPSLNMGRF SSGETPNPEF  180
LPTNNLEIPS VEFKGLGVNQ ELYPSFVNIP AGNFLSAGLS PSCSNSILYS KMHPAKRLRE  240
SELSLPGFGA VHPALEQYND DFQTASKSFR TSYDHDISSS SYLPSGSHAL INGNSSSLPI  300
SWAMKLELPS LQYSHSQMGS WASPSPLPSL ESVDTLIQTP PSEHAESGHH SPQNNGLLES  360
ILYESRALKN TKNNSCGQTP NTDAPANGAD SSSQLHDASQ LHDADWDSCG DPNSPLGHST  420
ASVYRECTPV SGNSLDEPQL MKTLPVKQEK PDWVSMTNGN ETDGNSRHLN ISRPDFLLDS  480
NWFGLSADYG KDYFILRDAI GALLAEDVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30381415107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236957.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A166DP300.0A0A166DP30_DAUCS; Uncharacterized protein
STRINGcassava4.1_005846m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.35e-90myb domain protein 33