PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006329 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 510aa MW: 55993.8 Da PI: 5.1296 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l DCAR_006329 40 KGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ +++++++++G++ W++ a++++ gRt++++k++w++ DCAR_006329 93 KGSFTPDEERRIIELHAKMGNK-WARMAAELP-GRTDNEIKNFWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.38 | 35 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.28E-29 | 39 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-15 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-11 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 25.288 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-11 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 95 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MSNRTNESED KMEANDYMDS PSTEEATSEG NMTGGGLLKK GPWTSAEDAI LVDYVEKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPD LKKGSFTPDE ERRIIELHAK MGNKWARMAA 120 ELPGRTDNEI KNFWNTRIKR RQRAGLPIYP PDICSQSFDE NSPSLNMGRF SSGETPNPEF 180 LPTNNLEIPS VEFKGLGVNQ ELYPSFVNIP AGNFLSAGLS PSCSNSILYS KMHPAKRLRE 240 SELSLPGFGA VHPALEQYND DFQTASKSFR TSYDHDISSS SYLPSGSHAL INGNSSSLPI 300 SWAMKLELPS LQYSHSQMGS WASPSPLPSL ESVDTLIQTP PSEHAESGHH SPQNNGLLES 360 ILYESRALKN TKNNSCGQTP NTDAPANGAD SSSQLHDASQ LHDADWDSCG DPNSPLGHST 420 ASVYRECTPV SGNSLDEPQL MKTLPVKQEK PDWVSMTNGN ETDGNSRHLN ISRPDFLLDS 480 NWFGLSADYG KDYFILRDAI GALLAEDVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 38 | 141 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236957.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
TrEMBL | A0A166DP30 | 0.0 | A0A166DP30_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_005846m | 1e-167 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 5e-90 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006329 |