PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NF-YB | ||||||||
Protein Properties | Length: 171aa MW: 18809.2 Da PI: 5.5536 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 82.4 | 5.8e-26 | 26 | 115 | 7 | 96 |
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++P nv+ +m++++P+++ is d+ ++q+cv +fi +vt+ea+ +c + r ti+++d+l al +lGf++y+ pl +y+++ +e++ e DCAR_006326 26 LVPAPNVTGLMRRIIPNQGEISADSVISIQQCVIKFIRYVTAEANTRCGEGMRTTITAHDVLIALNKLGFHHYIGPLFIYMNRLQEFQPE 115 68999********************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-23 | 18 | 115 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.19E-21 | 27 | 116 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-11 | 27 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MKRTHEEREN FECHENSSEQ RISYDLVPAP NVTGLMRRII PNQGEISADS VISIQQCVIK 60 FIRYVTAEAN TRCGEGMRTT ITAHDVLIAL NKLGFHHYIG PLFIYMNRLQ EFQPEQGDPL 120 VIRRTLFQPR GMGIGGPGFD VEGVMTMGGF VGDDQNDAPS GSAAHSTGDA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-24 | 26 | 111 | 12 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233484.1 | 1e-125 | PREDICTED: nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | A0A166DNZ8 | 1e-124 | A0A166DNZ8_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-27 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006326 |