PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006303
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 489aa    MW: 54621 Da    PI: 6.6737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006303genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.8e-10326371655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l P+     +k  + a++L +Av YIk+Lq
  DCAR_006303 326 SIAERVRRTRISARMKKLQDLFPNM----DKQANTADMLDLAVVYIKDLQ 371
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.351320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-13323382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-9324375No hitNo description
Gene3DG3DSA:4.10.280.106.2E-13325381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.3001.1E-24422488IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141915.176423488No hitNo description
SuperFamilySSF525408.54E-20423488IPR027417P-loop containing nucleoside triphosphate hydrolase
TIGRFAMsTIGR002313.2E-14427488IPR005225Small GTP-binding protein domain
PRINTSPR004491.6E-21428449No hitNo description
SMARTSM001751.3E-6428488No hitNo description
PfamPF000714.7E-21429488IPR001806Small GTPase superfamily
PRINTSPR004491.6E-21451467No hitNo description
PRINTSPR004491.6E-21469488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MYNSREMDSL LFSSNFRFAT AAEFTKPKDL MHSELKNYRS RDFETTGQRK EEEQSSDCFL  60
EALCADTVGG QPGRADYLDM KASNIEEVDF NARFGAGDSK VNGGEKEVVA DSGYLVACGA  120
GNMYSDNMSQ VKSQKSISSS NCSNLIRHSS SPAGFFANLA DEIGFTETND VGNFRSGRET  180
NTELNFKSGR LGDYIDISSK RSSHSRFMPQ IAESLDEKIE ISDGYLANGQ HGGDSNRLYV  240
PNLQNDSTCN SLKRYRDGEG KMLADMNAMD TPNDDPKHYT SGLLHQLSLP NTFAEITTME  300
NFVNFQQDST PCKIRAKRGF ATHPRSIAER VRRTRISARM KKLQDLFPNM DKQANTADML  360
DLAVVYIKDL QKEVQTLNET RAKCTCPKLK HLLFSGHQSD PICDRSGDLW SKMSNFHGDF  420
NQKIDYVFKV VLIGDSAVGK SQLLARFAKN QFSLDSKATI GVEFQTRTLV IDQKTIKAQI  480
WDTAGQER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1oiv_A1e-254184882090RAS-RELATED PROTEIN RAB-11A
1oiv_B1e-254184882090RAS-RELATED PROTEIN RAB-11A
4c4p_A6e-26418488272RAS-RELATED PROTEIN RAB-11A
4lwz_A7e-26418488272Ras-related protein Rab-11A
4lwz_C7e-26418488272Ras-related protein Rab-11A
4lx0_A7e-26418488272Ras-related protein Rab-11A
4lx0_C7e-26418488272Ras-related protein Rab-11A
5jcz_A7e-26418488474Ras-related protein Rab-11A
5jcz_D7e-26418488474Ras-related protein Rab-11A
5jcz_I7e-26418488474Ras-related protein Rab-11A
6ixv_E6e-26418488474Ras-related protein Rab-11A
6ixv_F6e-26418488474Ras-related protein Rab-11A
6ixv_G6e-26418488474Ras-related protein Rab-11A
6ixv_H6e-26418488474Ras-related protein Rab-11A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236176.10.0PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBLA0A166DN900.0A0A166DN90_DAUCS; Uncharacterized protein
STRINGVIT_13s0064g01290.t013e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-46bHLH family protein