PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 1223aa MW: 137141 Da PI: 5.6812 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.3 | 3.1e-28 | 919 | 969 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++isl++l++yF++++kdAA ++gvc+T+LKriCRq+GI+RWP+Rkik++ DCAR_006285 919 ESNISLQVLRQYFAGSLKDAATSIGVCPTTLKRICRQHGISRWPSRKIKKV 969 789**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.915 | 903 | 989 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.0E-24 | 921 | 969 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.17E-21 | 1116 | 1207 | No hit | No description |
PROSITE profile | PS51745 | 23.091 | 1122 | 1207 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.7E-22 | 1122 | 1207 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 5.2E-22 | 1122 | 1204 | No hit | No description |
CDD | cd06407 | 2.28E-35 | 1123 | 1206 | No hit | No description |
Pfam | PF00564 | 3.0E-16 | 1123 | 1206 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1223 aa Download sequence Send to blast |
MEDGSPLNMF KSVSNNNMDL DLMDGLFDDG CWLEATPSSF WQQSPSPNAS DFSSYFPIVS 60 ANNINHLVPY ANEKDIQDEK EKLNSSNNTR FVYPLLDESD GSEKNRWDAS ASTTQSRSFL 120 VQAGKLNTRL WIAPSADPNP ASSVKNRLIQ AFEYLKNITR DDFLIQIWLP VKREGKIVLS 180 TINQPFSLDP KSKSLECYRY VSSSYHFAAE ENSKEFFGLP GRVFLKKWPE WMPDVHLLRR 240 EDYPRVDYAL QYNVKGSIAL PVFERGNGAC LGVVEIVTTG XQFLSTLSHS ISLNMEDGSP 300 LNMFKSVSNN NMDLDLMDGL FDDGCWLEAT PSSFWQQSPS PNASDFSSYF PIVSANNINH 360 LVPYANEKDI QDEKEKLNSS NNTRFVYPLL DESDGSEKNR WDASASTTQS RSFLVQAGKL 420 NTRLWIAPSA DPNPASSVKN RLIQAFEYLK NITRDDFLIQ IWLPVKREGK IVLSTINQPF 480 SLDPKSKSLE CYRYVSSSYH FAAEENSKEF FGLPGRVFLK KWPEWMPDVH LLRREDYPRV 540 DYALQYNVKG SIALPVFERG NGACLGVVEI VTTGPDVNCL PEVDDVCKAL EAVDLRSSEM 600 FTPAKIMESH ESNLTELTEI KEFLNSVCST YNLPLAQTWA PCNHKDTDQG ENSACLSIVT 660 SAFCVLNEQF LAFHEACCKH HLLKVEGVVG RALGTNQPCF ATDISAFSET EYPFANHAKM 720 LKLKGAVAIR LRSIYTDATD FIIEFLLPLG CKNLEEQKQI VSAILSEIQQ SCSNLRFISD 780 QELEAATDLL PEREEANTSV GKLFKENKHK LVLSSSSEEA TQYEASWISQ MMDSQQKSKG 840 ILVSLGNPKE ESEDELQGKT DWITTTGDLY PGIGHSGHQE VLQDGSGGSV KEVADMSFIK 900 EPRSSGAKKA GQYRRIKAES NISLQVLRQY FAGSLKDAAT SIGVCPTTLK RICRQHGISR 960 WPSRKIKKVG HSLKKLQLVI DSVQGNEGAI QLSSFYNNFP ELNSPNISGI SSLSTFKTDN 1020 HLEPQNQQTG SLLCPATTAS KSTSSSSHST NSSYCCSTEA KEMNANVSAP GELKRALSDV 1080 KFHESGQQDA KFLVRSHSQR VLSSHSPLQN NNNIQAKQNC RAFRVKATFG QEKHRFRMPE 1140 YWRFSDLQEE ISRRFNKDIE DVNKVDLRYL DEDSEWILLT CNDDLEECID IHRSSKARTI 1200 KILLRDARFP NLGSSLDSCG PS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232227.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
TrEMBL | A0A166DMT9 | 0.0 | A0A166DMT9_DAUCS; Uncharacterized protein | ||||
STRING | VIT_03s0038g03710.t01 | 0.0 | (Vitis vinifera) | ||||
STRING | XP_009623517.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006285 |