PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 427aa MW: 47333 Da PI: 4.5027 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81 | 1.3e-25 | 67 | 119 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+ Wt+e+H++Fvea++qL G+++A Pk+ile m+ +gLt e+v+SHLQkYRl DCAR_006227 67 TRVIWTSEMHRKFVEAIAQL-GEDRAFPKKILEEMNEPGLTKENVASHLQKYRL 119 799*****************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.084 | 63 | 122 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-18 | 64 | 123 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-26 | 64 | 123 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-22 | 67 | 119 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-7 | 71 | 118 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MEKLYENDGF AVAGSENGET SNRVNTSFGD EINQTTENRK RKEPEGSSSG EQPDDGDQDD 60 SHVQKRTRVI WTSEMHRKFV EAIAQLGEDR AFPKKILEEM NEPGLTKENV ASHLQKYRLS 120 LKKSLVESDF NADTGSTKTP YIYNSSLGNC QRHYMGTSQI GSRNYLPVST SDHSSLYRIN 180 YTGIGSSGVR LAPPSYSPLN GSFGDHGGEK GDKLLSILNK RRCSNTSDHH ATRSSTSHCA 240 FMGLQFADDG KSLLVGGPKR SEGVPIENYS TNSDFYYQES AAPAFPSFSV EKYAQDSPLP 300 PLPECEDYLE ETTLPLPEFY VENSFPPLED TVTSQPIITN SPWNSNMNMA SDALINHEVS 360 LPPLPSEITW DSYPACTTIN SIPQTMTQHS VLPSESQWNA NNEEQELLLP WSPSEIPWNL 420 DLDPVP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-19 | 64 | 123 | 3 | 62 | ARR10-B |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233451.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Refseq | XP_017233816.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
TrEMBL | A0A166FGB8 | 0.0 | A0A166FGB8_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 4e-25 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006227 |