PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_006164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 102aa MW: 11136.9 Da PI: 4.5113 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 37.9 | 4.3e-12 | 12 | 99 | 6 | 88 |
NF-YB 6 rflPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP + v r++k +l + +k is kd+ cv fi ++++ a+d c++ +r+ i+++d++ al ++ f + +eplk+ l+ DCAR_006164 12 EELPKTIVRRLVKDTLSQCSKdgdISvlKDSLLAFSVCVRIFIQYLSATANDVCKEANRNIITANDVFKALEEIEFPELIEPLKASLE 99 57899999******99876663334433788888999***********************************************9775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 3.6E-8 | 13 | 82 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.6E-23 | 13 | 99 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.43E-18 | 14 | 99 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 102 aa Download sequence Send to blast |
MANKTAPVAD PEELPKTIVR RLVKDTLSQC SKDGDISVLK DSLLAFSVCV RIFIQYLSAT 60 ANDVCKEANR NIITANDVFK ALEEIEFPEL IEPLKASLEG L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232924.1 | 1e-65 | PREDICTED: DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A0A161Y7A5 | 4e-66 | A0A161Y7A5_DAUCS; Uncharacterized protein | ||||
STRING | Solyc11g068480.1.1 | 2e-42 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-26 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_006164 |