PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006122
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 321aa    MW: 35673.2 Da    PI: 5.6549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006122genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10137180755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    E+rRR+r+++++  Lr l+P+      +K++Ka+i+  A  Y+++Lq
  DCAR_006122 137 VQEQRRRSRMKDKLYALRALVPNI-----TKMDKASIVGDAALYVQDLQ 180
                  57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-15130201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.573130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7138180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-11139182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MERAGSSENP MGNVQEAYCL ADLVDEANLA RFISLSTGDT AQPDVHFCHN FLDCDTINGC  60
LVINQFEPSF GLPYDHVDNP PITPFSDPHS LFNNLPNSCN ELKEAEDACE YSSGTMTTTT  120
TSAPKRSKKG DRTRTLVQEQ RRRSRMKDKL YALRALVPNI TKMDKASIVG DAALYVQDLQ  180
KQAKKLKAEV ASLESSLTRM ERQQGGINDN ENKIRTADFY PTIKIILQIS VCQVEENGYY  240
VRVVSNKGHG VAASLYKALD SLSTFILHSS NLATQNETDT FHFTFNLNVK EVESDMNAPN  300
MKLWVAAAFL NQGFDLKQPL *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234486.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A161X2Q60.0A0A161X2Q6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.19e-59FER-like regulator of iron uptake