PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006116
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 320aa    MW: 35707.2 Da    PI: 6.51
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006116genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10138181755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    E+rRR+r+++++  Lr l+P+      +K++Ka+i+  A  Y+++Lq
  DCAR_006116 138 VQEQRRRSRMKDKLYALRALVPNI-----TKMDKASIVGDAALYVQDLQ 181
                  68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.573131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-15131202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15133201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-12137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7139181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.83E-11140183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEKTGSSGNP MGNVQEAYCL ADLVDDANLA RFISLSRGET AQPDGHFCHN FLDCDTINGC  60
LVHNQFEPFI GLPYDHFDNP PITPFSDPHS LFNNLPNSYN ELKEAQEDAC EYSSGTMTTT  120
TTSAPKRSKK GDRTRTLVQE QRRRSRMKDK LYALRALVPN ITKMDKASIV GDAALYVQDL  180
QKQAKKLKAE VASLESSLTR MERQQGGIHD NENKIQIADF YQTVKMILQI RVCQVEENGY  240
YVRVVSNKGH GVAASLYKAL DPLSTFILHS SNLATQNDTF LSTFNLNVRE VESDTNAPNM  300
KLWVAAAFLN QGFDLKQPL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234573.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A166DHQ60.0A0A166DHQ6_DAUCS; Uncharacterized protein
STRINGXP_009793167.12e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-59FER-like regulator of iron uptake