PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 373aa MW: 42840.8 Da PI: 7.1896 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.7 | 3.1e-24 | 211 | 265 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerF +a e+LGG +A Pk+il+ m+v g+t+e++kSHLQk R DCAR_006080 211 KPRLRWTPELHERFTRAAEELGGYFEARPKAILQKMNVRGITREQLKSHLQKVRK 265 79**************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.915 | 208 | 268 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-13 | 209 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 209 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-19 | 211 | 265 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-8 | 213 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MYSGILMTTS GMYKIHQEQQ HQQQQMRDKN TVVPPGFAPI LPRFGENPYE YFYGQPQSSI 60 HPAYLEHVSV NHTLNDMYKN YQQQQPRDKN TIVPPGFAPI LFGENPYENF HGQLQSSIHP 120 TYLEHVSVNH TLNQGFGVEN HQMMNNTPLY PQGFLYEYSM QQHAMNNSSA TQQTNAPQVE 180 RSSHENDLEV EVESPNALEV EVESPNSPKS KPRLRWTPEL HERFTRAAEE LGGYFEARPK 240 AILQKMNVRG ITREQLKSHL QKVRKSIIHT SSSSGGNLNG QARGRLDFES DVGGHGRLQM 300 SCKCLNNYCE YRIASVNEHL ANNVKFDSKD FCSWKSSRTS TYHQIFRNAT YDSDAHDMKF 360 KDVVFGWIIY IF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233368.1 | 9e-88 | PREDICTED: uncharacterized protein LOC108207431 | ||||
TrEMBL | A0A162ASG1 | 0.0 | A0A162ASG1_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.3 | 4e-16 | myb-related protein 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006080 |