PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006066
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92252.1 Da    PI: 5.8301
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006066genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-182381357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  DCAR_006066 23 KYVRYTAEQVEALERVYMECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 81
                 5679*****************************************************97 PP
2START1511e-471613672203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++++ ve+l d++  W +++++ e+   + +g  g+++l +++
  DCAR_006066 161 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHTCSGVAARACGLVSLEPTKIVEILKDRP-AWFRDCRRHEVFTMLPTGngGTIELLYTQ 257
                  789*******************************************************9999999999.***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                   +a+++l+p Rd +++Ry+ +l  g+ v++++S++     p+   s+++vR+e+lpSg+l++p+++g+s +++v+h +l++++++++lr+l++s+ + 
  DCAR_006066 258 IYAPTTLAPaRDLWTLRYTTSLDNGSIVVCERSLSGSGAGPQaaaSAQFVRGEMLPSGYLVRPCDGGGSIIHIVDHLNLQAWTVPEVLRPLYESSKVV 355
                  ***********************************9999999999***************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  +++++  +l++ 
  DCAR_006066 356 AQRMTITALRYI 367
                  ****99999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511882IPR001356Homeobox domain
SMARTSM003893.0E-152086IPR001356Homeobox domain
SuperFamilySSF466892.52E-162184IPR009057Homeodomain-like
CDDcd000863.00E-162383No hitNo description
PfamPF000466.4E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-182581IPR009057Homeodomain-like
CDDcd146864.86E-675114No hitNo description
PROSITE profilePS5084826.098151379IPR002913START domain
CDDcd088756.51E-68155371No hitNo description
SuperFamilySSF559611.79E-32160372No hitNo description
SMARTSM002341.6E-36160370IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-18160346IPR023393START-like domain
PfamPF018522.9E-45161368IPR002913START domain
PfamPF086707.2E-49696839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAMDVAHGES NEGSITKHLD NGKYVRYTAE QVEALERVYM ECPKPSSMRR QQLIRECPIL  60
ANIEPKQIKV WFQNRRCREK QRKESSRLQT VNRKLSAMNK LLMEENDRLQ KQVSQLVCEN  120
GYMRQQLHTV PSVTTDLSCE SAVTPQHSLR DANNPAGLLS IAEETLTEFL SKATGTAVDW  180
VQMPGMKPGP DSVGIFAISH TCSGVAARAC GLVSLEPTKI VEILKDRPAW FRDCRRHEVF  240
TMLPTGNGGT IELLYTQIYA PTTLAPARDL WTLRYTTSLD NGSIVVCERS LSGSGAGPQA  300
AASAQFVRGE MLPSGYLVRP CDGGGSIIHI VDHLNLQAWT VPEVLRPLYE SSKVVAQRMT  360
ITALRYIRQI AQETSGEVIY GMGRQPAVLR TFSQRLSRGF NEAINGFNDD GWSVINCEGS  420
EDVIVAVNSA KNLVSTSDLS SSLSLVGGVL CAKASMLLQN VPPAVLVRFL REHRSEWADF  480
NIDAYSAASL KGSSYAYPEM RPTRFTGNQI IMPLGQTIEH EEMLEVIRLE GHPLGQEDSF  540
MSRDIHLLQL CCGVDENAVG ACSELVFAPI DEMFPDDAPL LPSGFRIIPL ESKSGDVQDS  600
ITTNRTLDLA SSLEVGPAAN HAASDSSACY NMRSVLTIAF QFPYENNQPE NVATMARQYV  660
RSVVSSVQRV AMAISPSGMS LTAGPTVSPG APEAQTLANW ICQSHRYHLG TDLLSSDSVG  720
GDTSLKNLWH HPDAILCCSL KSLPVFIFAN QAGLDMLETT LVALQDITLD KIFDDTGRKA  780
FNSEFAKIMQ QGCAYLPGGI CMSTMGRHVS FEQAIAWKVL AAEENTVHCL AFSFVNWSFV  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234817.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A166DGK70.0A0A166DGK7_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]