PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006053
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 366aa    MW: 40933.7 Da    PI: 7.2615
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006053genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-24146247199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       + + + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++e
  DCAR_006053 146 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyrE-Q-RPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFL--RGESGE 239
                  99****************************9743.3.34569************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  DCAR_006053 240 LRLGIRRA 247
                  *****996 PP
2Auxin_resp111.77e-37272354183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  +a+a+stksvF+ +Y+Pra+++eFvv+ +k++k++k+++ vG+Rfkm+ + +d++err+sG+v+g+ dldp++Wp+SkWr+Lk
  DCAR_006053 272 VANAVSTKSVFHLFYSPRATHAEFVVPQQKYMKSIKSQILVGTRFKMKCDVDDAPERRFSGLVTGIGDLDPYKWPDSKWRCLK 354
                  689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-42137255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-39140257IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-22144246No hitNo description
PfamPF023623.3E-22146247IPR003340B3 DNA binding domain
SMARTSM010191.2E-22146248IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197146248IPR003340B3 DNA binding domain
PfamPF065071.7E-31272354IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEIDLNQVVD EVGRAADCNG DCNKSDGAVS PTYVELWHAC AGPLITLPKK GNVVVYFPQG  60
HLETSPFPHT QMPNFDLRPQ IFCRVMDVLL LANKESDEVY TQLSLLPVPE LLGMNLEGKQ  120
NDDLWVDKED EEGAGLMPTK STPHMFCKTL TASDTSTHGG FSVPRRAAED CFAPLDYREQ  180
RPSQELVAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLISGDAV LFLRGESGEL  240
RLGIRRAARP KNGLPDQVTG NQSSSYNILS SVANAVSTKS VFHLFYSPRA THAEFVVPQQ  300
KYMKSIKSQI LVGTRFKMKC DVDDAPERRF SGLVTGIGDL DPYKWPDSKW RCLKIMIFDI  360
SSNSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-112163622340Auxin response factor 1
4ldw_A1e-112163622340Auxin response factor 1
4ldw_B1e-112163622340Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235669.10.0PREDICTED: auxin response factor 4
SwissprotQ9ZTX91e-168ARFD_ARATH; Auxin response factor 4
TrEMBLA0A166DG180.0A0A166DG18_DAUCS; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
STRINGEMJ061420.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-170auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]