PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_005962

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 484aa MW: 52876.6 Da PI: 4.4493

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005962	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	52.7	7.9e-17	391	470	1	83
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 l++lL++cA+ v++gd + a++ L+++++++s +gd++qRla f+++L+ar+a++++++y+ l+ ++ + ++++l+a+++ DCAR_005962 391 LRTLLISCAQSVAAGDRRTANEQLKQIRQHSSATGDATQRLADLFANGLEARMAGTGTQIYAGLANKKIT---VAQKLKAYEV 470 6789**********************************************************99999988...7777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.506	365	483	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-14	391	470	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MVMDPGFSDV SEVLKGFGFD NELVSPDCDQ SPDIANGFKF EDETLGLSLS DIPFESPGHV 60 PRSCKPTSGL SLLDIPTNPP DPDLKNATPS TGSSETNSSD DGLFSDGVLK FLNQILMEDK 120 IEEKPCMFHD PLALQAAEKS FYDVIGKEYP ASSQQPVNVN CCLESPDGNF MGSSNVSSSG 180 GNYIGTQWVG DSTYHSTSPN SQSYPQESNM QWSLSSVESF NNSVNDPANL AASTDLIQSI 240 FNDSESILQF NRGMEEASKF LPNSTQLVID LDNYGLPSDK KEIQQEVVKE IEQEVVKVEK 300 DEDSTPTSKG RKHYQRQDSV VYERNKKHSE VYVEEETELL AMFDRVLLCG PPEKKEASEI 360 GPILHENEQP GPKGGKSRSK KKGNTAKEVD LRTLLISCAQ SVAAGDRRTA NEQLKQIRQH 420 SSATGDATQR LADLFANGLE ARMAGTGTQI YAGLANKKIT VAQKLKAYEV VTGYEIESRS 480 PKL*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MVMDPGFSDV SEVLKGFGFD NELVSPDCDQ SPDIANGFKF EDETLGLSLS DIPFESPGHV  60
PRSCKPTSGL SLLDIPTNPP DPDLKNATPS TGSSETNSSD DGLFSDGVLK FLNQILMEDK  120
IEEKPCMFHD PLALQAAEKS FYDVIGKEYP ASSQQPVNVN CCLESPDGNF MGSSNVSSSG  180
GNYIGTQWVG DSTYHSTSPN SQSYPQESNM QWSLSSVESF NNSVNDPANL AASTDLIQSI  240
FNDSESILQF NRGMEEASKF LPNSTQLVID LDNYGLPSDK KEIQQEVVKE IEQEVVKVEK  300
DEDSTPTSKG RKHYQRQDSV VYERNKKHSE VYVEEETELL AMFDRVLLCG PPEKKEASEI  360
GPILHENEQP GPKGGKSRSK KKGNTAKEVD LRTLLISCAQ SVAAGDRRTA NEQLKQIRQH  420
SSATGDATQR LADLFANGLE ARMAGTGTQI YAGLANKKIT VAQKLKAYEV VTGYEIESRS  480
PKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236188.1	0.0	PREDICTED: scarecrow-like protein 33
TrEMBL	A0A161X2A3	0.0	A0A161X2A3_DAUCS; Uncharacterized protein
STRING	XP_009606498.1	1e-109	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	2e-65	GRAS family protein

Link Out ? help Back to Top
Phytozome	DCAR_005962