PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_005950

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 241aa MW: 26790.9 Da PI: 7.0719

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005950	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.8	5.9e-29	125	177	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rl+Wtp+LH+rFve+v++L G+++A+Pk+i+e+m+v+gL++e+v+SHLQkYRl DCAR_005950 125 ARLVWTPQLHKRFVEVVAHL-GIKNAVPKRIMEMMNVEGLSRENVASHLQKYRL 177 79****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.186	121	180	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-29	122	182	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-19	122	181	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	125	177	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-8	127	176	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MMTDYTGGGY SDDDRVSDWE HGLPNVSDLT PLSQPLIPPE LASAFSITPE PYRTNLDVAR 60 ASQRTMSSLK GQYNNNNNNN NYIQANNWNS SSLDEFPISD PNGDCLRSDP RNSRKLETEV 120 ATKRARLVWT PQLHKRFVEV VAHLGIKNAV PKRIMEMMNV EGLSRENVAS HLQKYRLYLK 180 RMQGLSSEGS SVYDQLFGST PVPQSLREGN GGSMATAYGG QMVAMPGYGQ AGMYHGYDYR 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-31	124	180	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234004.1	1e-180	PREDICTED: transcription factor LUX
Swissprot	Q9SNB4	2e-66	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A162AS65	1e-179	A0A162AS65_DAUCS; Uncharacterized protein
STRING	VIT_06s0004g05120.t01	8e-78	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2432	23	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.3	3e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_005950

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]