PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26064.3 Da PI: 6.1602 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 100 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+ ae Aa a+++a+ +++g DCAR_005691 100 SYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDDAEAAAMAYDQAAFSMRG 150 69*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.04E-18 | 99 | 159 | No hit | No description |
SMART | SM00380 | 1.4E-36 | 100 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 100 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-22 | 100 | 160 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-30 | 100 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.853 | 100 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-13 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-13 | 140 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGLSHDAAPT FKSFGVPHDS TDYSPESSFG SPSPRSWEDL DRFLEHGSLP FNFNDSEEML 60 LFGVLAEGAR ETSEANSCPR IKEEDVTSTA KITNPIKEKS YRGVRRRPWG KFAAEIRDST 120 RNGVRVWLGT FDDAEAAAMA YDQAAFSMRG SMAILNFPVE RVKESLKDMK YICEEGSSPV 180 VALKKRHTMR RKSLSRKSKA KETKMDNVVV LEDLGAEYLE QLLSSSESNF SW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-28 | 97 | 159 | 2 | 64 | ATERF1 |
3gcc_A | 9e-28 | 97 | 159 | 2 | 64 | ATERF1 |
5wx9_A | 2e-27 | 101 | 160 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234033.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 1e-74 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A169WMJ5 | 1e-171 | A0A169WMJ5_DAUCS; Uncharacterized protein | ||||
STRING | XP_010262305.1 | 3e-88 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-53 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005691 |
Publications ? help Back to Top | |||
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