PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005622
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 663aa    MW: 75651.1 Da    PI: 9.8222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005622genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.9e-15158201246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        WT++Ed++l  av+ +G ++W ++a+ +  gRt+ qc +rw k
      DCAR_005622 158 REWTEDEDDKLRAAVATYGERNWQSVASVLE-GRTGTQCSNRWIK 201
                      68*****************************.***********87 PP
2Myb_DNA-binding46.39.5e-15210255147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++ Ed++l+ av  +G ++W+ Ia++++ gR   qc++rw + 
      DCAR_005622 210 KGKWSPNEDKRLKVAVMFFGEKNWRNIAQYVP-GRDHVQCRERWKNC 255
                      79******************************.***********996 PP
3Myb_DNA-binding49.87.8e-16264306347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       W++eEd++l++a++++G+  W++Ia+++   Rt++qc  rw ++
      DCAR_005622 264 EWSEEEDLRLKEAFEEHGPS-WNKIASYVS-QRTDNQCLRRWKTL 306
                      7*****************66.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.97233151IPR017877Myb-like domain
SMARTSM007170.04637153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-84056IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-8116157IPR009057Homeodomain-like
SuperFamilySSF466892.42E-20136208IPR009057Homeodomain-like
PROSITE profilePS5129423.339152207IPR017930Myb domain
SMARTSM007176.1E-15156205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-18158205IPR009057Homeodomain-like
CDDcd001674.94E-12159203No hitNo description
PfamPF139213.5E-14160221No hitNo description
SuperFamilySSF466891.14E-28206303IPR009057Homeodomain-like
PROSITE profilePS5129413.798208256IPR017930Myb domain
SMARTSM007174.4E-13209258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-19211261IPR009057Homeodomain-like
CDDcd001675.59E-10212254No hitNo description
PROSITE profilePS5129421.546257311IPR017930Myb domain
SMARTSM007171.5E-12261309IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-17262307IPR009057Homeodomain-like
CDDcd001677.07E-11264307No hitNo description
PfamPF002491.2E-14264306IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MYEAKEKNTQ VMYYGPPDNS HVPNYKAVLH KFSDSFNRDK WTEDEDINLV KGIKQQFQDM  60
LLQKTYQNEE ILRQRSTGLV SDVEGFPGES NNFDSIIASI SDHDITDENM REFLPKVNWE  120
QLASMYTKRR SGAECEARTP FQCLAHYQRS LNPSILKREW TEDEDDKLRA AVATYGERNW  180
QSVASVLEGR TGTQCSNRWI KSLHPMRKKK GKWSPNEDKR LKVAVMFFGE KNWRNIAQYV  240
PGRDHVQCRE RWKNCLDPSV KLDEWSEEED LRLKEAFEEH GPSWNKIASY VSQRTDNQCL  300
RRWKTLFPHE VPRFQAASRI KKVALISNFV DREARRPALG PSDFVQLQLL DSVTETGKTD  360
SCRKGEKKSS YVAKLRSAKR KADAERSCES VLRLTNGKKR RFNAKKSSTQ DQETASVKGK  420
LSEVNSVAKS SAHDVHTARK QAPGRKRKKL SRTPDASQQA ATGVKEHTSK PSSCENECVD  480
TTNKEVGSLS EVDATKNKKS RKHIRKKNKL MEQVNEAQVH TGTDGIDVSK KSDALETCSS  540
DHAYLAISED CPPSPRGSPE RMLINGDVAE PFVRDSNDER PPRCPTPDIL DNLNLRAFTV  600
SRKVVVNRSR HRGRTLKQRR NADYEDDMTL AAFINQSRKA RKILLSSIKA SKPLPKCIDA  660
ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-271383116159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-271383116159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378400KRKADAERSCESVLRLTNGKKRR
2444448RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235843.10.0PREDICTED: uncharacterized protein LOC108209447 isoform X1
TrEMBLA0A161X1D40.0A0A161X1D4_DAUCS; Uncharacterized protein
STRINGMigut.D01451.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-111myb domain protein 4r1