PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005570
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 341aa    MW: 39054.6 Da    PI: 5.3784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005570genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-141473148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++  G g+W+ ++++ g            + R++k+c++rw +yl
      DCAR_005570 14 RGLWSPEEDEKLIRYITNNGYGCWSEVPEKAGqspypflfiftwLQRCGKSCRLRWINYL 73
                     788*******************************************************97 PP
2Myb_DNA-binding55.31.6e-1779123147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
      DCAR_005570  79 RGRFTPEEEKLIISLHSAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 123
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.967973IPR017930Myb domain
SuperFamilySSF466895.03E-2711120IPR009057Homeodomain-like
SMARTSM007171.0E-81375IPR001005SANT/Myb domain
PfamPF002492.0E-121473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221580IPR009057Homeodomain-like
CDDcd001672.75E-71773No hitNo description
PROSITE profilePS5129425.89574128IPR017930Myb domain
SMARTSM007173.3E-1778126IPR001005SANT/Myb domain
PfamPF002492.8E-1679123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2681128IPR009057Homeodomain-like
CDDcd001675.27E-1281124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT NNGYGCWSEV PEKAGQSPYP FLFIFTWLQR  60
CGKSCRLRWI NYLRPDIRRG RFTPEEEKLI ISLHSAVGNR WAHIASHLPG RTDNEIKNYW  120
NSWIKKKIRK PNPSSTNIVT PLPPPPPPPN TITTNTTIQP SQFNYNSTNQ LDFLTQDFEA  180
KPQFLQENTL FSSQSPIFMF ETTTSFNATH GDDISLRNES TFFHSATDMQ SDQPWNHQQQ  240
LMLPPAILPS FTTTANLDSI YLPPMIDNTD VVQSKNNTTD YVERENNVAL AELNEWVEIT  300
QQSACPSYLF WENTAFGEEE TVTNYNPDMG ALLTSFSSSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141287108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234533.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A162ARB90.0A0A162ARB9_DAUCS; Uncharacterized protein
STRINGcassava4.1_030636m1e-110(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-81myb domain protein 103