PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24806.6 Da PI: 4.5719 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 8 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv +v+++G + W++Iar+++ gRt++++k++w++y+ DCAR_005305 8 KGPWTEHEDVQLVFYVNLFGDRrwdfiakvsglkvagdKWSRIARKLP-GRTDNEIKNYWRTYM 70 79**********************************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.497 | 3 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-7 | 3 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.76E-14 | 6 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 7 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-5 | 8 | 37 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-9 | 10 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 43 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-8 | 44 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVQEEIRKGP WTEHEDVQLV FYVNLFGDRR WDFIAKVSGL KVAGDKWSRI ARKLPGRTDN 60 EIKNYWRTYM RKESQEKKRS MSPSPSHSNC SSSISSASPS LAADSQPIID TRERNFYDSR 120 GLDIYAANEN KSSKIHDCDG EEGYSMDEIW NDIELSPEES IKPVYGGYNE EILASPIWDY 180 CPDSLWMIDE EDSKMILPMS DPFQSLFVQG STHITG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017231479.1 | 1e-149 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 1e-42 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A166CXK9 | 1e-159 | A0A166CXK9_DAUCS; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 2e-70 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 9e-42 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005305 |
Publications ? help Back to Top | |||
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