PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005227
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 146aa    MW: 16047.8 Da    PI: 5.097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005227genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-193485256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y GVr ++ +g+++AeIrd + ng  k+++lg+f+tae Aa a+++a+++++g+
  DCAR_005227 34 RYLGVRMRP-WGKYAAEIRDRTRNG--KKVWLGTFDTAEAAAMAYDRAALSMRGP 85
                 799******.**********54465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-183392No hitNo description
SMARTSM003805.1E-343498IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-223493IPR016177DNA-binding domain
PROSITE profilePS5103221.973492IPR001471AP2/ERF domain
PfamPF008475.1E-133484IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-293493IPR001471AP2/ERF domain
PRINTSPR003671.9E-93546IPR001471AP2/ERF domain
PRINTSPR003671.9E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDQGRRAPNE AISSSDLKKE GVDSVDQKEE KEKRYLGVRM RPWGKYAAEI RDRTRNGKKV  60
WLGTFDTAEA AAMAYDRAAL SMRGPSAFLN FPSRQSSPAA ERSTGNSEEE QEVKTSVVVF  120
EDLGADLLEE LLTLSDKAPS TSTTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-273197268ATERF1
3gcc_A9e-273197268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233197.11e-102PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotA0A3Q7I5Y91e-33ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A166CVG51e-101A0A166CVG5_DAUCS; Uncharacterized protein
STRINGXP_009619700.12e-36(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-20ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]