PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_005004

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HD-ZIP

Protein Properties

Length: 267aa MW: 29281.9 Da PI: 8.7806

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005004	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.3	9.4e-12	139	167	28	56
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 ++++ LAk+lgL+ rqV vWFqNrRa+ k DCAR_005004 139 NQKTALAKRLGLKHRQVEVWFQNRRARTK 167 57899**********************98 PP
2	HD-ZIP_I/II	86.8	2.8e-28	137	201	25	89
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 e+++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E d+e+Lkr + al+een++L+kev+eLr+ DCAR_005004 137 ENNQKTALAKRLGLKHRQVEVWFQNRRARTKLKQTEIDCEFLKRYFHALTEENAKLKKEVQELRA 201 789************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.3E-10	1	128	IPR006712	HD-ZIP protein, N-terminal
Pfam	PF00046	4.2E-9	139	167	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.23E-9	139	178	IPR009057	Homeodomain-like
CDD	cd00086	1.17E-7	140	170	No hit	No description
PRINTS	PR00031	1.7E-5	140	149	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50071	12.115	140	169	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-10	140	172	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-5	149	165	IPR000047	Helix-turn-helix motif
SMART	SM00340	2.8E-19	169	212	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.9E-9	169	201	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVQQRDKWGL SLSLSFPGSS NHHHKLTNNN NQTAHVSSPL ELNLVPSATS NPLPENTTQK 60 SHSSGPNMET CRVDRRCSLT GIDLEVDQRC SLTGIDLNGL PAADIGDEAD RVLSPNRTQS 120 SLSGNKRSLI REGAGGENNQ KTALAKRLGL KHRQVEVWFQ NRRARTKLKQ TEIDCEFLKR 180 YFHALTEENA KLKKEVQELR AFKLSPQFSI PPTTLTICPS CEHFSKSSSA PTLSVCPSST 240 HSKQPQVHAM SASTIDSIST CAPNVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	169	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234562.1	1e-143	PREDICTED: homeobox-leucine zipper protein HAT4-like
TrEMBL	A0A161Y4G0	0.0	A0A161Y4G0_DAUCS; Uncharacterized protein
STRING	XP_009589459.1	9e-52	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400067540	6e-52	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	6e-41	homeobox protein 2

Link Out ? help Back to Top
Phytozome	DCAR_005004