PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 294aa MW: 32588.4 Da PI: 7.2526 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 140 | 194 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ +q+ +Le+ F++++++s+++++ LAk+lgL+ rqV vWFqNrRa+ k DCAR_005003 140 RKKLRLSIDQTAILEASFREHNTLSHNQKTALAKRLGLKHRQVEVWFQNRRARTK 194 67788999*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 110.7 | 9.9e-36 | 140 | 227 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rls +q ++LE sF+e+++L++++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E dye+Lk+ + al+een++L+kev+eLr DCAR_005003 140 RKKLRLSIDQTAILEASFREHNTLSHNQKTALAKRLGLKHRQVEVWFQNRRARTKLKQTEIDYEFLKTYFRALTEENAKLKKEVQELR 227 69*************************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.5E-13 | 1 | 115 | IPR006712 | HD-ZIP protein, N-terminal |
PROSITE profile | PS50071 | 17.086 | 136 | 196 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-15 | 138 | 200 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-18 | 138 | 205 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-16 | 140 | 194 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.74E-15 | 140 | 197 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-17 | 140 | 194 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.0E-5 | 167 | 176 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 171 | 194 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.0E-5 | 176 | 192 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.3E-8 | 196 | 227 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.2E-16 | 196 | 239 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVQQRDELGL SLSLSFPGSF NHNHKLTNNN NQTAHVSSPL ELNDLVPSAT PNLVPENNTQ 60 KSHSGPKMET CREDRRYSLT GIDLNGLPTA DMGDEADRVL SPNSTPSSLC GNKRSLIREG 120 ANGENVTEFS IDQEDGDNSR KKLRLSIDQT AILEASFREH NTLSHNQKTA LAKRLGLKHR 180 QVEVWFQNRR ARTKLKQTEI DYEFLKTYFR ALTEENAKLK KEVQELRTFK LSPQVSIPPT 240 TLTICPSCEH LSEPSSAPTF SVCPSSTRSE TPQVHAMSTT TIASISTCAP NVD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 144 | SRKKLRL |
2 | 188 | 196 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234562.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46600 | 4e-60 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A166CPE4 | 0.0 | A0A166CPE4_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_013034m | 9e-74 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-58 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005003 |
Publications ? help Back to Top | |||
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