PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 32588.4 Da    PI: 7.2526
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005003genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-19140194256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++ +q+ +Le+ F++++++s+++++ LAk+lgL+ rqV vWFqNrRa+ k
  DCAR_005003 140 RKKLRLSIDQTAILEASFREHNTLSHNQKTALAKRLGLKHRQVEVWFQNRRARTK 194
                  67788999*********************************************98 PP

2HD-ZIP_I/II110.79.9e-36140227188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rls +q ++LE sF+e+++L++++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E dye+Lk+ + al+een++L+kev+eLr
  DCAR_005003 140 RKKLRLSIDQTAILEASFREHNTLSHNQKTALAKRLGLKHRQVEVWFQNRRARTKLKQTEIDYEFLKTYFRALTEENAKLKKEVQELR 227
                  69*************************************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.5E-131115IPR006712HD-ZIP protein, N-terminal
PROSITE profilePS5007117.086136196IPR001356Homeobox domain
SMARTSM003897.1E-15138200IPR001356Homeobox domain
SuperFamilySSF466899.84E-18138205IPR009057Homeodomain-like
PfamPF000461.5E-16140194IPR001356Homeobox domain
CDDcd000866.74E-15140197No hitNo description
Gene3DG3DSA:1.10.10.603.3E-17140194IPR009057Homeodomain-like
PRINTSPR000312.0E-5167176IPR000047Helix-turn-helix motif
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
PRINTSPR000312.0E-5176192IPR000047Helix-turn-helix motif
PfamPF021834.3E-8196227IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.2E-16196239IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVQQRDELGL SLSLSFPGSF NHNHKLTNNN NQTAHVSSPL ELNDLVPSAT PNLVPENNTQ  60
KSHSGPKMET CREDRRYSLT GIDLNGLPTA DMGDEADRVL SPNSTPSSLC GNKRSLIREG  120
ANGENVTEFS IDQEDGDNSR KKLRLSIDQT AILEASFREH NTLSHNQKTA LAKRLGLKHR  180
QVEVWFQNRR ARTKLKQTEI DYEFLKTYFR ALTEENAKLK KEVQELRTFK LSPQVSIPPT  240
TLTICPSCEH LSEPSSAPTF SVCPSSTRSE TPQVHAMSTT TIASISTCAP NVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144SRKKLRL
2188196RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234562.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotP466004e-60HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A166CPE40.0A0A166CPE4_DAUCS; Uncharacterized protein
STRINGcassava4.1_013034m9e-74(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-58homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]