PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20818.4 Da PI: 6.2475 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.4e-19 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g+ DCAR_004990 23 IYRGVRIRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 73 69****888.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-13 | 22 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.73E-31 | 22 | 82 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-21 | 23 | 81 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.273 | 23 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-31 | 23 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVKKSEKCSS SSSSSIADGK HPIYRGVRIR SWGKWVSEIR EPRKKSRIWL GTFATPEMAA 60 RAHDVAAIAI KGHSAFLNFP DLAHKLPEPA SKSPKDIQAA AAQAAAMDDT TTSHETETEA 120 ELSGAETRPS EAFGESSSTS PTRRGEDPFL GLPHLFQPNL GPKFGYEFPW SLALAETIDG 180 EIWLDEPLLW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 21 | 80 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234225.1 | 1e-138 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9M080 | 8e-45 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A162APW4 | 1e-135 | A0A162APW4_DAUCS; Uncharacterized protein | ||||
STRING | XP_010264388.1 | 5e-50 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004990 |
Publications ? help Back to Top | |||
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