PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 14858.9 Da PI: 5.0054 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 36.1 | 1.8e-11 | 30 | 92 | 1 | 63 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvy 63 +C aCk r C+++C+++p fpa+ + + lF + +l+l++a ++ e + ++ ++ DCAR_004956 30 KCGACKGASRVCKTECPFRPFFPADTADMAHLISSLFHKKGILRLMNACKTAEEVTSCRTRLF 92 5***********************************************999888777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.618 | 29 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-9 | 30 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MTTDTTGADL TDPDNEEEEE EIPAAVAVDK CGACKGASRV CKTECPFRPF FPADTADMAH 60 LISSLFHKKG ILRLMNACKT AEEVTSCRTR LFNVAVSLIN GTARTHEAEI SELKELVKTQ 120 AASIGVQSES VRKMLPN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236935.1 | 3e-97 | PREDICTED: uncharacterized protein LOC108210167 | ||||
TrEMBL | A0A166CMY4 | 4e-96 | A0A166CMY4_DAUCS; Uncharacterized protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004956 |