PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004918

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 272aa MW: 32164.1 Da PI: 6.7957

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004918	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.1	2.4e-55	8	136	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ppGfrFhPtdeelv +yLk+k+++k+++l +vik+vd+y++ePwdL++ k+ + ++k+wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s k DCAR_004918 8 PPGFRFHPTDEELVEYYLKNKISSKRMDL-DVIKDVDLYRIEPWDLEElcKLGTeDQKDWYFFSHKDKKYPTGTRTNRATKQGFWKATGRDKAIYS-K 103 9**************************.9***********954544442566**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++l g++ktLvfykgrap+g+k+dW+mheyrle DCAR_004918 104 HSLAGMRKTLVFYKGRAPNGHKSDWIMHEYRLE 136 899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-60	6	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.045	7	156	IPR003441	NAC domain
Pfam	PF02365	4.6E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDTISHIPPG FRFHPTDEEL VEYYLKNKIS SKRMDLDVIK DVDLYRIEPW DLEELCKLGT 60 EDQKDWYFFS HKDKKYPTGT RTNRATKQGF WKATGRDKAI YSKHSLAGMR KTLVFYKGRA 120 PNGHKSDWIM HEYRLETDEN GQPQEEGWVV CRVFKKRLTT VRKMDEHEPL SNWYDDQIRL 180 LPDFESRRQI TDNPYTPFHN DQNYTCKQEL GQLQHFRSHE RYLQPPQLEG QEVLHSAASV 240 SFSSGVPYGF EQSLMLTQED YKLQHCSQLT D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232777.1	0.0	PREDICTED: NAC domain-containing protein 7-like isoform X2
Swissprot	Q9FWX2	1e-113	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A166CM57	0.0	A0A166CM57_DAUCS; Uncharacterized protein
STRING	XP_007155625.1	1e-131	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-115	NAC 007

Link Out ? help Back to Top
Phytozome	DCAR_004918

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]