PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ARF | ||||||||
Protein Properties | Length: 787aa MW: 87299.3 Da PI: 6.2583 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.5e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + DCAR_004816 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220 99*****************************8544444..48************************************************..888999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ DCAR_004816 221 LFLGIRRA 228 9***9986 PP | |||||||
2 | Auxin_resp | 120.3 | 1.5e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPra++seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k DCAR_004816 253 AAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.84E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-41 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-21 | 126 | 222 | No hit | No description |
Pfam | PF02362 | 2.6E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.083 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-34 | 253 | 336 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.928 | 653 | 737 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.19E-6 | 654 | 728 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 787 aa Download sequence Send to blast |
MRLSSASFNR QSPEGEKSCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVVASTNRE 60 VDAHIPNHPN LPPQLICQLH NITMHADAET DEVYAQMTLQ PLNAEEQKEP FLPADLAAHS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHENEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LFLGIRRAIR PQTVMPSSVL 240 SCDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSFNGKLIL HSYYDNGNPH DYILPTRIKD ESLGMNSPLM 420 WLRGDNGEQA FQSLNFQGLG VSPWMQPRVD ASMLGMQTAD IYQAMAAAAL QEMRTVDTSK 480 HSNPSAMQFQ QTQDEDSQLN FSRSAALLTS AGWPPKRVAV DPLLSSGVSQ SFLPQLQQLG 540 SLHTNSSQDA FPLLPYNGRD CSIDQGGDND SHRPLLFGAN IDSTSLLVQN GISGLGGVGS 600 DGNSTSVPFT SSNYMSNAGV DFSLNPSITA SSCIDETNFL QSHENLVQKD TPPTFVKVYK 660 SGSFGRSLDI AKFSSYIELR SELAHMFGLE GQLEDPIRSG WQLVFVDREN DVLLLGDDPW 720 PEFVNSVWCI KILSPQEVQE MGKQGLELLN SVPVQRLSSN NCDNYPSQHE SRNLSNGIAS 780 VGSLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-164 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733022.1 | 0.0 | auxin response factor 6 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A166CKJ8 | 0.0 | A0A166CKJ8_DAUCS; Auxin response factor | ||||
STRING | XP_010540601.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16741 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004816 |