PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004752

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 489aa MW: 54029.5 Da PI: 5.5348

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004752	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	324	371	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq DCAR_004752 324 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 371 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-17	318	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.74E-11	318	375	No hit	No description
PROSITE profile	PS50888	15.802	320	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-17	320	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	324	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	326	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MEKEYYFNAE ISPQFNFQPF GNAFQANPGF EDPMEQCSQY ETALSSMVSS PTASNSVTDH 60 FAVRELFGKL GSINNAGDIS PEFIQRSSYI NSPNTSCYNT PIDSPPELQV PMMNQLIGNP 120 MPMNSALPAL PTDPGFAERA AKFSCFGSRS LNGRTSALGI NNAEFQFRRS RHLMGSENLP 180 RVSSSPSLNA DGSPMVNKNY VQSQMNLRSD NGSNEESSVS EQIPAQDIEL PAPVELNSRK 240 RKGFPRGKAK EAALLKSTKV AEGEENSNVM KRSKMTSENV NGGVKKEEET NIATEEDKKQ 300 DNKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML 360 DEIINYVQSL QRQVEFLSMK LSTVNSNQNV NIVNLLPKDM FQPNGSILNQ MYPVESSASA 420 YHGQQTSQLH HDKPLQPLDA TLCRNLGIQL EGFGEGLPQF PAFSEDDLQS IVQTGFAPNQ 480 TSHMNIEL*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MEKEYYFNAE ISPQFNFQPF GNAFQANPGF EDPMEQCSQY ETALSSMVSS PTASNSVTDH  60
FAVRELFGKL GSINNAGDIS PEFIQRSSYI NSPNTSCYNT PIDSPPELQV PMMNQLIGNP  120
MPMNSALPAL PTDPGFAERA AKFSCFGSRS LNGRTSALGI NNAEFQFRRS RHLMGSENLP  180
RVSSSPSLNA DGSPMVNKNY VQSQMNLRSD NGSNEESSVS EQIPAQDIEL PAPVELNSRK  240
RKGFPRGKAK EAALLKSTKV AEGEENSNVM KRSKMTSENV NGGVKKEEET NIATEEDKKQ  300
DNKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML  360
DEIINYVQSL QRQVEFLSMK LSTVNSNQNV NIVNLLPKDM FQPNGSILNQ MYPVESSASA  420
YHGQQTSQLH HDKPLQPLDA TLCRNLGIQL EGFGEGLPQF PAFSEDDLQS IVQTGFAPNQ  480
TSHMNIEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017229761.1	0.0	PREDICTED: transcription factor bHLH78-like
TrEMBL	A0A166JF41	0.0	A0A166JF41_DAUCS; Uncharacterized protein
STRING	EMJ02381	1e-151	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-91	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_004752