PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004708
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 568aa    MW: 64183.1 Da    PI: 5.0844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004708genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12312354754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  e+ErrRR+++N+++ +Lr+l+Pk      +Kl+ a+iL  A+eY+ +L
  DCAR_004708 312 EAERRRRAKLNERLYNLRSLVPKI-----TKLDRASILGDAIEYVMEL 354
                  89*********************7.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-122129IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.339305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16308367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10312354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15312366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.01E-12312359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDCCCGGSEK KVADNMNGEE GAGDDEELVF TVASMNPCRD LVFPHPTTKA CQLLSHLPSS  60
LPMDSGIHAQ ALLSNQPRWL NFSNTCHSDM LHEDAVETRV LVPVSVGLIE LFVDKQVPED  120
QNLIDFITLQ FNISQDHQSM MNSNFSFKPT ESDHKLQKEL FHPPVSPATM IQTLNLQDEI  180
SPDHIHLHNS SLNFFQQFDD HNMENENKGL LESPDEQLNA DHRPLNTFGQ EDLDPFQKSL  240
ISNAIASVDA QMINTSMEPM KTKKRRSNDD RDSMNRSDSL SDDEDNNDDE DNNDGKYRRR  300
NGKGGAQCKN LEAERRRRAK LNERLYNLRS LVPKITKLDR ASILGDAIEY VMELKQQVED  360
LQNELERNIE DEPNDNDQST LQSEVVHGSE GKIGTKSELG KTYNRAYNVG ASSSIATEVS  420
TKKNLNSEST NDKVQQMEPQ VEVIQLDGNE LFVKVFCEHK PGGFVKLMEA LNSLGLEVTN  480
VNVTSLLSLV LNVFKVERKD CDMIQADHVR ESLLELSRNP NRSWPEISKA ATSENGNGND  540
PHSYHPYHHH QHPVHFHHNH HLHHLHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297317RRRNGKGGAQCKNLEAERRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224647.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_017224653.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_017224661.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_017233975.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_017233982.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_017233991.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBLA0A166JDM40.0A0A166JDM4_DAUCS; Uncharacterized protein
STRINGcassava4.1_029776m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-60bHLH family protein