PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 568aa MW: 64183.1 Da PI: 5.0844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.6e-12 | 312 | 354 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 e+ErrRR+++N+++ +Lr+l+Pk +Kl+ a+iL A+eY+ +L DCAR_004707 312 EAERRRRAKLNERLYNLRSLVPKI-----TKLDRASILGDAIEYVMEL 354 89*********************7.....7**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-12 | 2 | 129 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.339 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-16 | 308 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-16 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-10 | 312 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-15 | 312 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.01E-12 | 312 | 359 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MDCCCGGSEK KVADNMNGEE GAGDDEELVF TVASMNPCRD LVFPHPTTKA CQLLSHLPSS 60 LPMDSGIHAQ ALLSNQPRWL NFSNTCHSDM LHEDAVETRV LVPVSVGLIE LFVDKQVPED 120 QNLIDFITLQ FNISQDHQSM MNSNFSFKPT ESDHKLQKEL FHPPVSPATM IQTLNLQDEI 180 SPDHIHLHNS SLNFFQQFDD HNMENENKGL LESPDEQLNA DHRPLNTFGQ EDLDPFQKSL 240 ISNAIASVDA QMINTSMEPM KTKKRRSNDD RDSMNRSDSL SDDEDNNDDE DNNDGKYRRR 300 NGKGGAQCKN LEAERRRRAK LNERLYNLRS LVPKITKLDR ASILGDAIEY VMELKQQVED 360 LQNELERNIE DEPNDNDQST LQSEVVHGSE GKIGTKSELG KTYNRAYNVG ASSSIATEVS 420 TKKNLNSEST NDKVQQMEPQ VEVIQLDGNE LFVKVFCEHK PGGFVKLMEA LNSLGLEVTN 480 VNVTSLLSLV LNVFKVERKD CDMIQADHVR ESLLELSRNP NRSWPEISKA ATSENGNGND 540 PHSYHPYHHH QHPVHFHHNH HLHHLHN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 317 | RRRNGKGGAQCKNLEAERRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017224647.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Refseq | XP_017224653.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Refseq | XP_017224661.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Refseq | XP_017233975.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1 | ||||
Refseq | XP_017233982.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1 | ||||
Refseq | XP_017233991.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1 | ||||
TrEMBL | A0A166JDM4 | 0.0 | A0A166JDM4_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_029776m | 1e-149 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9672 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 9e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004707 |